mRNA_L-elsbetiae_contig20725.6250.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5JWT3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT3_9PHAE) HSP 1 Score: 147 bits (371), Expect = 7.120e-37 Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1 Query: 52 GSALVARITKPHMSALVCYSEQNMPRPAGSQHWYADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVI 423 G +VAR+T+ + +MP P S+ W ADSG+SA ITN MYNVR L P++++IQIGD+ LI V AVG++DL+FHQ+G +GKQED V+V E +VPGCGFNLFSVWKVSHKHEV+ Sbjct: 407 GKVVVARLTRRPTVEKAFLCQPSMPNPICSEQWQADSGASAMITNKVDAMYNVRHLGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHEVM 531
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5K0P8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P8_9PHAE) HSP 1 Score: 145 bits (367), Expect = 5.160e-36 Identity = 70/128 (54.69%), Postives = 91/128 (71.09%), Query Frame = 1 Query: 52 GSALVARITKPHMSALVCYSEQNMPRPAGSQHWYADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINP 432 G +VAR+T+ + +MP P GS+ W ADSG+SA I+N MYNVR P++++I+IGD+ LI V AVG++DL+FHQ+G +GKQED +V E +VPGCGFNLFSVWKVSHKHEV NP Sbjct: 74 GKVVVARLTRRPTVEKAFLCQPSMPNPIGSEQWQADSGASAMISNKVDAMYNVRHSGPDERFIRIGDSALIKVAAVGSLDLRFHQVGADGKQEDLDGTVPEVLFVPGCGFNLFSVWKVSHKHEVRTNP 201
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5JXD4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD4_9PHAE) HSP 1 Score: 139 bits (351), Expect = 7.000e-34 Identity = 71/133 (53.38%), Postives = 92/133 (69.17%), Query Frame = 1 Query: 52 GSALVARITKPHMSALVCYSEQNMPRPAGSQHWYADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQE--DFSVSVEAHYVPGCGFNLFSVWKVSHKHEVIINPQGTH 444 G +VAR+T+ + +MP P GS+ W ADSG+SA ITN MYNVR P++++IQIGD+ LI V AVG++DL+FHQ+G +GKQE DF+V E +VPGCG NLFSV KVSHK+EV INP + Sbjct: 702 GKVVVARLTRRPTVEKAFLCQPSMPNPIGSEQWQADSGASAMITNKVDAMYNVRHSGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEGLDFTVP-EILFVPGCGLNLFSVSKVSHKYEVRINPNAAY 833
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5KQJ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ6_9PHAE) HSP 1 Score: 137 bits (344), Expect = 3.490e-33 Identity = 66/108 (61.11%), Postives = 82/108 (75.93%), Query Frame = 1 Query: 124 PRPAGSQHWYADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINPQGTH 444 P P ++ ADSG+SA I+N MYNVR L P++Q+IQIGD+ LI V AVG++DL+FHQ+G +GKQED V+V E +VPGCGFNLFSVWKVSHKHEV INP + Sbjct: 334 PYPPENRGRQADSGASAMISNKVDAMYNVRHLGPDEQFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHEVRINPNAEY 441
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5KZJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZJ6_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.220e-31 Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 1 Query: 154 ADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINPQGTH 444 ADSG+SA ITN MYNVR L P++++IQIGD+ LI V AVG++DL+FHQ+G +GKQED V+V E +VPGC FNLFSVWKVSHKHEV INP + Sbjct: 460 ADSGASAMITNKVDAMYNVRHLGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCSFNLFSVWKVSHKHEVRINPNAEY 557
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5JMH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH6_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.560e-31 Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1 Query: 154 ADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINP 432 ADSG+SA ITN MYNVR L P++++IQIGD+ LI V AVG++DL+FHQ+G +GKQED V+V E +VPGCGFNLFSVWKVSHKH V INP Sbjct: 320 ADSGASAMITNKVDAMYNVRHLGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHAVRINP 413
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5K592_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K592_9PHAE) HSP 1 Score: 129 bits (323), Expect = 3.680e-30 Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1 Query: 154 ADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINPQGTH 444 ADSG+SA I+N MYNVR L P++++IQIGD+ LI V AVG++DL+FHQ+G +GKQED V+V E +VP CGFNLFSVW VSHKHEV INP + Sbjct: 359 ADSGASAMISNKMDAMYNVRHLGPDERFIQIGDSALIKVAAVGSVDLRFHQIGADGKQEDLDVTVPEILFVPRCGFNLFSVWNVSHKHEVRINPDAEY 456
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5KH18_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH18_9PHAE) HSP 1 Score: 125 bits (313), Expect = 6.680e-29 Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 1 Query: 154 ADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINP 432 ADSG++A ITN MYNVR L P+++++QIGD+ I + AVG++DL FHQ+G +GKQED V+V E +VPGCGFNLFSVWKV HKH+V INP Sbjct: 302 ADSGANAMITNKVDAMYNVRHLGPDERFVQIGDSAPIKIAAVGSLDLGFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVFHKHKVRINP 395
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5JY94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY94_9PHAE) HSP 1 Score: 122 bits (305), Expect = 8.710e-28 Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 1 Query: 154 ADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINPQGT 441 ADSG+SA I+N +YNVR L P++Q+IQIGD I V AVG++DL+FHQ+G +GKQED +V E +V GCGFNLFSVWKVSHKHE +I GT Sbjct: 671 ADSGASAMISNKVDAIYNVRHLGPDEQFIQIGDLAFIKVAAVGSLDLRFHQIGADGKQEDLDYTVPEFLFVLGCGFNLFSVWKVSHKHEHVITLTGT 767
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5LPH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPH8_9PHAE) HSP 1 Score: 100 bits (250), Expect = 6.040e-24 Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1 Query: 199 MYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKH 414 MYNVR L P++++IQIGD+ LI V AVG++DL+FHQ+G + KQED V+V E +V GCG NLFSVWKVSHKH Sbjct: 1 MYNVRHLGPDERFIQIGDSALIKVAAVGSVDLRFHQIGADVKQEDLDVTVPEVLFVRGCGLNLFSVWKVSHKH 73 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig20725.6250.1 >prot_L-elsbetiae_contig20725.6250.1 ID=prot_L-elsbetiae_contig20725.6250.1|Name=mRNA_L-elsbetiae_contig20725.6250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp MSEPTRVYELPCVRVPHGSALVARITKPHMSALVCYSEQNMPRPAGSQHWback to top mRNA from alignment at L-elsbetiae_contig20725:556..1326+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig20725.6250.1 ID=mRNA_L-elsbetiae_contig20725.6250.1|Name=mRNA_L-elsbetiae_contig20725.6250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=771bp|location=Sequence derived from alignment at L-elsbetiae_contig20725:556..1326+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig20725:556..1326+ >mRNA_L-elsbetiae_contig20725.6250.1 ID=mRNA_L-elsbetiae_contig20725.6250.1|Name=mRNA_L-elsbetiae_contig20725.6250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig20725:556..1326+ (Laminarionema elsbetiae ELsaHSoW15)back to top |