mRNA_L-elsbetiae_contig20725.6250.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20725.6250.1
Unique NamemRNA_L-elsbetiae_contig20725.6250.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5JWT3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT3_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 7.120e-37
Identity = 71/125 (56.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query:   52 GSALVARITKPHMSALVCYSEQNMPRPAGSQHWYADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVI 423
            G  +VAR+T+          + +MP P  S+ W ADSG+SA ITN    MYNVR L P++++IQIGD+ LI V AVG++DL+FHQ+G +GKQED  V+V E  +VPGCGFNLFSVWKVSHKHEV+
Sbjct:  407 GKVVVARLTRRPTVEKAFLCQPSMPNPICSEQWQADSGASAMITNKVDAMYNVRHLGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHEVM 531          
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5K0P8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.160e-36
Identity = 70/128 (54.69%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   52 GSALVARITKPHMSALVCYSEQNMPRPAGSQHWYADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINP 432
            G  +VAR+T+          + +MP P GS+ W ADSG+SA I+N    MYNVR   P++++I+IGD+ LI V AVG++DL+FHQ+G +GKQED   +V E  +VPGCGFNLFSVWKVSHKHEV  NP
Sbjct:   74 GKVVVARLTRRPTVEKAFLCQPSMPNPIGSEQWQADSGASAMISNKVDAMYNVRHSGPDERFIRIGDSALIKVAAVGSLDLRFHQVGADGKQEDLDGTVPEVLFVPGCGFNLFSVWKVSHKHEVRTNP 201          
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5JXD4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD4_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 7.000e-34
Identity = 71/133 (53.38%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   52 GSALVARITKPHMSALVCYSEQNMPRPAGSQHWYADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQE--DFSVSVEAHYVPGCGFNLFSVWKVSHKHEVIINPQGTH 444
            G  +VAR+T+          + +MP P GS+ W ADSG+SA ITN    MYNVR   P++++IQIGD+ LI V AVG++DL+FHQ+G +GKQE  DF+V  E  +VPGCG NLFSV KVSHK+EV INP   +
Sbjct:  702 GKVVVARLTRRPTVEKAFLCQPSMPNPIGSEQWQADSGASAMITNKVDAMYNVRHSGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEGLDFTVP-EILFVPGCGLNLFSVSKVSHKYEVRINPNAAY 833          
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5KQJ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ6_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.490e-33
Identity = 66/108 (61.11%), Postives = 82/108 (75.93%), Query Frame = 1
Query:  124 PRPAGSQHWYADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINPQGTH 444
            P P  ++   ADSG+SA I+N    MYNVR L P++Q+IQIGD+ LI V AVG++DL+FHQ+G +GKQED  V+V E  +VPGCGFNLFSVWKVSHKHEV INP   +
Sbjct:  334 PYPPENRGRQADSGASAMISNKVDAMYNVRHLGPDEQFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHEVRINPNAEY 441          
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5KZJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZJ6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.220e-31
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 1
Query:  154 ADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINPQGTH 444
            ADSG+SA ITN    MYNVR L P++++IQIGD+ LI V AVG++DL+FHQ+G +GKQED  V+V E  +VPGC FNLFSVWKVSHKHEV INP   +
Sbjct:  460 ADSGASAMITNKVDAMYNVRHLGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCSFNLFSVWKVSHKHEVRINPNAEY 557          
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5JMH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH6_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.560e-31
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1
Query:  154 ADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINP 432
            ADSG+SA ITN    MYNVR L P++++IQIGD+ LI V AVG++DL+FHQ+G +GKQED  V+V E  +VPGCGFNLFSVWKVSHKH V INP
Sbjct:  320 ADSGASAMITNKVDAMYNVRHLGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHAVRINP 413          
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5K592_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K592_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.680e-30
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1
Query:  154 ADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINPQGTH 444
            ADSG+SA I+N    MYNVR L P++++IQIGD+ LI V AVG++DL+FHQ+G +GKQED  V+V E  +VP CGFNLFSVW VSHKHEV INP   +
Sbjct:  359 ADSGASAMISNKMDAMYNVRHLGPDERFIQIGDSALIKVAAVGSVDLRFHQIGADGKQEDLDVTVPEILFVPRCGFNLFSVWNVSHKHEVRINPDAEY 456          
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5KH18_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH18_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 6.680e-29
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  154 ADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINP 432
            ADSG++A ITN    MYNVR L P+++++QIGD+  I + AVG++DL FHQ+G +GKQED  V+V E  +VPGCGFNLFSVWKV HKH+V INP
Sbjct:  302 ADSGANAMITNKVDAMYNVRHLGPDERFVQIGDSAPIKIAAVGSLDLGFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVFHKHKVRINP 395          
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5JY94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY94_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 8.710e-28
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 1
Query:  154 ADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKHEVIINPQGT 441
            ADSG+SA I+N    +YNVR L P++Q+IQIGD   I V AVG++DL+FHQ+G +GKQED   +V E  +V GCGFNLFSVWKVSHKHE +I   GT
Sbjct:  671 ADSGASAMISNKVDAIYNVRHLGPDEQFIQIGDLAFIKVAAVGSLDLRFHQIGADGKQEDLDYTVPEFLFVLGCGFNLFSVWKVSHKHEHVITLTGT 767          
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Match: A0A6H5LPH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPH8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.040e-24
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  199 MYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKFHQLGTNGKQEDFSVSV-EAHYVPGCGFNLFSVWKVSHKH 414
            MYNVR L P++++IQIGD+ LI V AVG++DL+FHQ+G + KQED  V+V E  +V GCG NLFSVWKVSHKH
Sbjct:    1 MYNVRHLGPDERFIQIGDSALIKVAAVGSVDLRFHQIGADVKQEDLDVTVPEVLFVRGCGLNLFSVWKVSHKH 73          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20725.6250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JWT3_9PHAE7.120e-3756.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K0P8_9PHAE5.160e-3654.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JXD4_9PHAE7.000e-3453.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQJ6_9PHAE3.490e-3361.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KZJ6_9PHAE1.220e-3164.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH6_9PHAE1.560e-3167.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K592_9PHAE3.680e-3062.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KH18_9PHAE6.680e-2961.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JY94_9PHAE8.710e-2860.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LPH8_9PHAE6.040e-2464.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20725contigL-elsbetiae_contig20725:556..1326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size773
Cds size771
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815852.0340018-CDS-L-elsbetiae_contig20725:555..13261622815852.0340018-CDS-L-elsbetiae_contig20725:555..1326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20725 556..1326 +
1691683146.3812244-CDS-L-elsbetiae_contig20725:555..13261691683146.3812244-CDS-L-elsbetiae_contig20725:555..1326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20725 556..1326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20725.6250.1prot_L-elsbetiae_contig20725.6250.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20725 556..1326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20725.6250.1

>prot_L-elsbetiae_contig20725.6250.1 ID=prot_L-elsbetiae_contig20725.6250.1|Name=mRNA_L-elsbetiae_contig20725.6250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
MSEPTRVYELPCVRVPHGSALVARITKPHMSALVCYSEQNMPRPAGSQHW
YADSGSSATITNDCHLMYNVRRLPPNDQYIQIGDANLISVVAVGTIDLKF
HQLGTNGKQEDFSVSVEAHYVPGCGFNLFSVWKVSHKHEVIINPQGTHLL
NRRLRFIRGSSNDSLYATRISRLPKVHIGREDALVASQTNKWPGPQITPT
ECALAGTLLESMERLRPAGLGMKNELDLLLGNTTAIDVLLESSVCIPPRV
SVEHAEQ
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mRNA from alignment at L-elsbetiae_contig20725:556..1326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20725.6250.1 ID=mRNA_L-elsbetiae_contig20725.6250.1|Name=mRNA_L-elsbetiae_contig20725.6250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=771bp|location=Sequence derived from alignment at L-elsbetiae_contig20725:556..1326+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGAGCCTACGCGTGTGTATGAACTCCCCTGTGTCCGCGTTCCCCA CGGTAGTGCTCTCGTGGCGCGTATTACGAAACCACACATGTCAGCACTTG TCTGTTATTCGGAGCAGAACATGCCGCGCCCGGCAGGCAGCCAACACTGG TATGCTGACTCAGGGTCTAGTGCCACAATTACAAATGATTGCCACCTCAT GTACAACGTGAGACGCCTACCACCGAATGACCAATACATCCAGATCGGCG ATGCGAACCTCATCAGCGTGGTCGCAGTAGGCACCATCGATCTCAAGTTC CACCAGCTAGGAACGAATGGCAAGCAGGAGGATTTCAGTGTCAGCGTAGA GGCGCACTATGTGCCTGGATGCGGATTTAACTTGTTTTCGGTTTGGAAAG TCTCCCACAAGCACGAGGTGATAATCAACCCCCAGGGTACCCACCTACTG AACAGAAGATTACGTTTCATTCGAGGTTCATCCAACGACTCGCTGTACGC CACCCGCATCTCGCGCCTACCGAAAGTACACATCGGCAGAGAGGACGCAC TAGTTGCATCCCAAACGAACAAATGGCCGGGACCGCAAATTACACCTACC GAGTGTGCGCTGGCGGGTACGTTGCTAGAGAGCATGGAACGTCTGAGGCC TGCGGGTTTGGGGATGAAGAATGAGCTTGACTTGCTGCTTGGGAATACGA CTGCGATTGACGTGCTGCTTGAGAGTTCGGTGTGCATTCCCCCCCGTGTG TCGGTAGAGCACGCAGAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20725:556..1326+

>mRNA_L-elsbetiae_contig20725.6250.1 ID=mRNA_L-elsbetiae_contig20725.6250.1|Name=mRNA_L-elsbetiae_contig20725.6250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig20725:556..1326+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGAGCCTACGCGTGTGTATGAACTCCCCTGTGTCCGCGTTCCCCA
CGGTAGTGCTCTCGTGGCGCGTATTACGAAACCACACATGTCAGCACTTG
TCTGTTATTCGGAGCAGAACATGCCGCGCCCGGCAGGCAGCCAACACTGG
TATGCTGACTCAGGGTCTAGTGCCACAATTACAAATGATTGCCACCTCAT
GTACAACGTGAGACGCCTACCACCGAATGACCAATACATCCAGATCGGCG
ATGCGAACCTCATCAGCGTGGTCGCAGTAGGCACCATCGATCTCAAGTTC
CACCAGCTAGGAACGAATGGCAAGCAGGAGGATTTCAGTGTCAGCGTAGA
GGCGCACTATGTGCCTGGATGCGGATTTAACTTGTTTTCGGTTTGGAAAG
TCTCCCACAAGCACGAGGTGATAATCAACCCCCAGGGTACCCACCTACTG
AACAGAAGATTACGTTTCATTCGAGGTTCATCCAACGACTCGCTGTACGC
CACCCGCATCTCGCGCCTACCGAAAGTACACATCGGCAGAGAGGACGCAC
TAGTTGCATCCCAAACGAACAAATGGCCGGGACCGCAAATTACACCTACC
GAGTGTGCGCTGGCGGGTACGTTGCTAGAGAGCATGGAACGTCTGAGGCC
TGCGGGTTTGGGGATGAAGAATGAGCTTGACTTGCTGCTTGGGAATACGA
CTGCGATTGACGTGCTGCTTGAGAGTTCGGTGTGCATTCCCCCCCGTGTG
TCGGTAGAGCACGCAGAGCAGATGTCTGAGCCTACGCGTGTGTATGAACT
CCCCTGTGTCCGCGTTCCCCACGGTAGTGCTCTCGTGGCGCGTATTACGA
AACCACACATGTCAGCACTTGTCTGTTATTCGGAGCAGAACATGCCGCGC
CCGGCAGGCAGCCAACACTGGTATGCTGACTCAGGGTCTAGTGCCACAAT
TACAAATGATTGCCACCTCATGTACAACGTGAGACGCCTACCACCGAATG
ACCAATACATCCAGATCGGCGATGCGAACCTCATCAGCGTGGTCGCAGTA
GGCACCATCGATCTCAAGTTCCACCAGCTAGGAACGAATGGCAAGCAGGA
GGATTTCAGTGTCAGCGTAGAGGCGCACTATGTGCCTGGATGCGGATTTA
ACTTGTTTTCGGTTTGGAAAGTCTCCCACAAGCACGAGGTGATAATCAAC
CCCCAGGGTACCCACCTACTGAACAGAAGATTACGTTTCATTCGAGGTTC
ATCCAACGACTCGCTGTACGCCACCCGCATCTCGCGCCTACCGAAAGTAC
ACATCGGCAGAGAGGACGCACTAGTTGCATCCCAAACGAACAAATGGCCG
GGACCGCAAATTACACCTACCGAGTGTGCGCTGGCGGGTACGTTGCTAGA
GAGCATGGAACGTCTGAGGCCTGCGGGTTTGGGGATGAAGAATGAGCTTG
ACTTGCTGCTTGGGAATACGACTGCGATTGACGTGCTGCTTGAGAGTTCG
GTGTGCATTCCCCCCCGTGTGTCGGTAGAGCACGCAGAGCAG
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