mRNA_L-elsbetiae_contig2061.6214.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2061.6214.1
Unique NamemRNA_L-elsbetiae_contig2061.6214.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2061.6214.1 vs. uniprot
Match: D8LRE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRE0_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 7.530e-97
Identity = 145/171 (84.80%), Postives = 157/171 (91.81%), Query Frame = 1 
Query:   40 MSEEAKTSEVNVAMPMSDVHADTQPKVSKFDQSKNPIPKVVPPRGSKDARSFRPSTLAEINMMNRYEPLEMKMCGKTYGIGCGNSLEDVLLISGCILALWSFILGVSGLLLKSAIDTDRNHTALWVYFWIFILGAFLLGGMIATGQVERFRGEAEAAQKQHDEDEAKAMAA 552
            MSEEAKT+EV V+MP +D+HADTQ +VSKFDQSKNPIPKVVPPRGSKDARSFRPSTLAEINMMNRYEPLE+K  GKT+GIGCGNSLEDVLLI GCILALWSF+LGVSGLLLKSAIDTD  HTALWVYFW+FILG FLLGGMIATGQVERFR E  AA+KQHD+D A AM+A
Sbjct:    1 MSEEAKTNEVAVSMPKADIHADTQQEVSKFDQSKNPIPKVVPPRGSKDARSFRPSTLAEINMMNRYEPLELKCGGKTFGIGCGNSLEDVLLIMGCILALWSFVLGVSGLLLKSAIDTDLRHTALWVYFWLFILGCFLLGGMIATGQVERFRSERAAAEKQHDDDAAAAMSA 171
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2061.6214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRE0_ECTSI7.530e-9784.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2061contigL-elsbetiae_contig2061:161..4484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002890.1
Exons2
Model size715
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2061.6214.1prot_L-elsbetiae_contig2061.6214.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2061 321..4445 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815848.9787252-UTR-L-elsbetiae_contig2061:160..3201622815848.9787252-UTR-L-elsbetiae_contig2061:160..320Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2061 161..320 -
1691683144.2689536-UTR-L-elsbetiae_contig2061:160..3201691683144.2689536-UTR-L-elsbetiae_contig2061:160..320Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2061 161..320 -
1622815849.0193899-UTR-L-elsbetiae_contig2061:4445..44841622815849.0193899-UTR-L-elsbetiae_contig2061:4445..4484Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2061 4446..4484 -
1691683144.2970567-UTR-L-elsbetiae_contig2061:4445..44841691683144.2970567-UTR-L-elsbetiae_contig2061:4445..4484Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2061 4446..4484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815848.9975965-CDS-L-elsbetiae_contig2061:320..4801622815848.9975965-CDS-L-elsbetiae_contig2061:320..480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2061 321..480 -
1691683144.2797697-CDS-L-elsbetiae_contig2061:320..4801691683144.2797697-CDS-L-elsbetiae_contig2061:320..480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2061 321..480 -
1622815849.0092208-CDS-L-elsbetiae_contig2061:4089..44451622815849.0092208-CDS-L-elsbetiae_contig2061:4089..4445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2061 4090..4445 -
1691683144.288987-CDS-L-elsbetiae_contig2061:4089..44451691683144.288987-CDS-L-elsbetiae_contig2061:4089..4445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2061 4090..4445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2061.6214.1

>prot_L-elsbetiae_contig2061.6214.1 ID=prot_L-elsbetiae_contig2061.6214.1|Name=mRNA_L-elsbetiae_contig2061.6214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MSEEAKTSEVNVAMPMSDVHADTQPKVSKFDQSKNPIPKVVPPRGSKDAR
SFRPSTLAEINMMNRYEPLEMKMCGKTYGIGCGNSLEDVLLISGCILALW
SFILGVSGLLLKSAIDTDRNHTALWVYFWIFILGAFLLGGMIATGQVERF
RGEAEAAQKQHDEDEAKAMAA*
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mRNA from alignment at L-elsbetiae_contig2061:161..4484-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2061.6214.1 ID=mRNA_L-elsbetiae_contig2061.6214.1|Name=mRNA_L-elsbetiae_contig2061.6214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4324bp|location=Sequence derived from alignment at L-elsbetiae_contig2061:161..4484- (Laminarionema elsbetiae ELsaHSoW15)
CCAAAGCTCACTTTATCCATCTGAAGTACCATCACCACCATGTCCGAGGA
AGCCAAAACCTCCGAGGTGAACGTGGCTATGCCCATGTCCGATGTGCACG
CCGACACGCAGCCCAAGGTGTCCAAGTTCGACCAGAGCAAGAACCCCATC
CCGAAGGTGGTGCCTCCCCGCGGGTCGAAGGATGCTCGGTCTTTCCGGCC
GTCGACCCTCGCGGAGATCAACATGATGAACCGCTACGAGCCGCTAGAGA
TGAAGATGTGCGGCAAGACCTACGGAATCGGCTGCGGCAACTCGCTGGAG
GACGTGCTGCTCATCTCCGGGTGCATCCTCGCGCTCTGGTCGTTTATTCT
GGGCGTGTCGGGGCTGCTTCTCAAGTCGGCAATAGACACCGACAGGTACG
CAACTACATCTCCTTTTTTTTCACTTGGTTTCAGAGAGGGGGTCGTTGGC
GTGTCGAAAAAAGTCGCCGCTGGCCGCTGGCTTTTGTCATGTACTCTCCC
ATCATGTGTGCGTTTCTGCATTACCGAGCACGAGGGATGGTGGCTGTTTG
TGTCGTGTGTGGTACCAAGTTGCACTCCTCCCGATTTCCCGAGGACAAGA
GGGCCAAAAAAAAAAGTCTTCCGCGCGCGGCGCAGCAGCCTCTCGTCATC
AATCTGAAGAGTTGTGCTGCAGACGGAAGGGACCCGAGGTGTCCCACGCT
TTGTGTTGTTACGGCACCGAGTGCTGTGCGTGCTTTGCCTTGACGTAGTC
AGTCCTCTGCCATACCACTCGTAGATGCACTCCCATGACCCACGCGCCCA
ACTCACCAATCTGGGTAACGATATCATTTCACGTACACATCAGGCATGTA
ATAGCAGCAGTCTAAAGTCTGTCTACACTCACGTCCCGAGAGGGCGAGAG
GAGAGCCGAGAGCAGCGAGTGCTGCACAGTATATAGCACCACGCATGTTT
TTGGAACCTTAACGATTAATCACCGCGTAGCAAGACGGACCGTGAGAAAA
CGGGCGGGGACAAAAGTATGAGAGCAGCAGGGTTGCGTTGCTGCATCAAA
ATCCCCTGTGGCGCTACAAAACAAAAACTCCTGTATTGTAGTAGATGTGT
ACCCTCGCCGATGCCGCCGCGTGTGGAAGCCACGATCGAGTGCGTACAAC
AATTGCCTCTTTTGCTTTGATTCTCGGGATCTCCTTCAACATCCGGACAG
CAGAGCACCTCAGTAGGCTCCCAGCGTTCTGTGTGAACATACTTCGTCTC
GTTGGTTTTTTTGAAAATATTTATGTACATGAGGCTGGTGTTGTTGCCTT
CCCCACAGCGGTACATAAAACCGTTCCGATCTCTCTATACAGCAGTACCT
CCATATGTCCGTACGAATGCAAACTTCGACCTTACTGCTGTCGACGAGGG
AAAGGGACGGGTGAACCCTCCTCGCGATATAAACCCCAGGCAAGCACCGC
ACAAGGTGGGAGTGGGGGGCGGCTCGGGGAGAGGAACGCTTCTGTGTGAC
CCGACCCACTACTGTTTATTATTGAACTCTCGCAAAATGCCCTCGTGGCA
AGGAGCCCGCCGAGCACTGGAAGTGGAAGTAAATGTGAAGAACCAAAAAC
ATATACCCAGCACGTGACGCGGCCGAATCCCGTGGTCACAGACTAAACAC
CACGCCCTGGAGAGGGTATGTAACTGAAAAATAAAAATGGACCCGCAGAG
CGCTTTGTTTTTTCGTTAGGATGGAATCTCAGACCCCTCGGAGCACACAT
GCACCAGCCCCGACAACATACAATCATGTACGCAATATACCTCCATATGT
ATGTTTGTACAAAACATATTCCCCGAGACCAAAAATTAATGGAATACGGA
GTATAAAAATAACACACCCAAATATTAAATCATAACATTATCTGTCCTTC
CGCCGATAAGACTGTGCTGTTGTGCCACAGGGGGGTATCCGTTGGGTGGG
AGCTACATCCATTTATACCTAAAAAAATATTAAAAGCACTACTTGTAGCA
TGTACTTGCAACCACTCTTTTTACGCGTCGATTTCCGTCCCGGTGGACCA
TATCATCCATCTGACGAAAAAGTACACCCTTGTGTCAAAACGAGCCGGCC
GTATCGCCTGCAACCGATGTCCTCGTGGCGTGTGTGCGCGCGCGTCACGT
GCCTGCTCGGTGCCACGACGACGTTTAGTAGTAGGGGAAGAGTTGAGTCG
GCGAGTTCCGAAAGCGGAGAAAGCCATCCACACACACTGCCTGCGCCTTA
CGATTTGTTTGTCCAAGCGCGGTACAACAGTTGCGACGAGACAGGAACAG
AGTGGTGCACTTGAAAAAAGAGTCTATGTACCTGCATACACACCTTCGTA
CAGGAGACTCCCTTCCAGGCGTGGCTCGTGAAATATGGTCCAGGGGGCGA
AGCAATTAAGGGAACATACATCTACGAAGTACACCATACATACACGTGTC
CGCGTTCCATCCGGCAGAAAATGCAAAAATGCGGCGATTAATTTTTTGAA
AAAACAAAACTCCGCCTGCAATGGGCAGGCGCCCCACCCCTCCCGTCCGC
CCGTAAATAGGTCGACAAAACAAAGTCGAAGAGAACATACAGACATCTGT
TTTAAAACGTGCCCACACGTGCTCTATACTTTCGTGAAAAGCATTTAGCG
CATGCAGCCAACGACGTAGACGACAAAGCCAGGCATATACACAGGTACTT
CATTTGTTGAAGGTGATAACGAGTAAATGTGTAAGGCTTGTGAACAGGCT
TCCCATGCATGATCCTTTTCGGCAGAAACGCGGCGTTTTATGTTTAACAA
CACACCTAAGTATACTACCTACCCACCTGCGAAAACAAATCGCCGCATAT
GGCAGCTCCCCGCAAAGCGAAATTGGCGAGAGGAGCACAGACGACAGCCA
AAAAGGAATGGCTATATTATAGCTGTCACGAAGCTGACGACTTGTTGCTG
CGGTTCGAGTTCTGCTGCTGTATCTTTACCTAGTTGCCGAAGAGAGTGGG
GCGTGCGAGTTCTTCTACTTTGCTACTAAAAAAAAAGGAACGTTTGCTGA
CGTTTTTTCGTGCGTATCTAGTGGCAGCCTCAACACGCCGGTCAGGATCT
TACGGCCTTTTACGCAGTTTCATGTCGATGTAGATTCTTATACATACACC
ATCGTATACGGGGTGGCGTCTCTTCCTCTATTTCAGAGCCCCCCCCCCCC
CTTTTCTCACAGGTAAATGATCTGCGGGAGGGGGAAACAGCTCGTGGGAT
GCCACAGCAAAACAGGCTCTCACTGCTGCAAAAAAATACCGAGCTCAACT
ACTTCCCTCTCTAAAGATAAAGCGTGCACGCGTATTGGGTGCGACAGCAA
AATATAGGCGTACTGCTACAAAAAAATACGAACTCAACTACTTCCCTCTC
TATAGGCGTGCACGCGCCCACATGATGGCAGATTGTAGTGTCGGGGTGAT
CGCCTTTCTCGTTGTCAGTAGCGAAGGGTTTCAGTCTTGCCAGTGCTCCG
CAAGACATAAGTACTGGCACTGCTTATAACCAAACACTTTGTAAAGTCGT
TAACCTGAACTCAACCAGCAGGCAATCTACGGAAGGACGACGGCACCACC
AACATCACCACCATGCCGTCCGCAAAGACCTTTGCAACTCATCCGTTTCG
CTGTATTGATAACCTTGACACCCTACCATCCACCATTCCGCGAGTTCAAC
CCGATCTACTGCATCTGCCTTACACCGTCCCTTTCGTACATGTTTGCCTG
CCAAGTTTTCCGTAACACATCCCCTTCGCCCCCTCCCCGTACCTGGGGGC
ACGCACACGGGGGACCCGTGCTAATTACCGAATTACCCCCCCCCCCCGCG
CCCACCCTCCAAATCTGCCCACCAAACACGACCTCTCTGTACCCCGCTCG
CTCCCTGACTCTGCTCTCTTTTGTACAACTCTCCCTCCTCGGTTGGTGTC
CGTTCGTTTTGCCTCGCCCCCCTCCCCCGAAAATCACGGGGAAAAACAAA
ACAGGAACCACACCGCACTCTGGGTGTACTTCTGGATCTTCATCCTCGGC
GCCTTCTTGTTGGGCGGCATGATCGCAACGGGGCAGGTTGAGCGCTTCCG
CGGAGAGGCGGAGGCGGCCCAGAAGCAGCACGACGAAGACGAGGCGAAGG
CAATGGCCGCCTAAGAGAAGAGGCAGGGAGAGAGAGAGAGCGAGGGGCCA
AGAAGTACATACAATAGTTCTTTGTTGTAAGTCGCGTTGGAGTGTAAATT
TTATCTCAAGCGCACAGAGAGAGAGAGAGAGTATGCGAGACAGAAAAGAC
CGAAGCAAGCAGCAGCACGGAGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2061:161..4484-

>mRNA_L-elsbetiae_contig2061.6214.1 ID=mRNA_L-elsbetiae_contig2061.6214.1|Name=mRNA_L-elsbetiae_contig2061.6214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig2061:161..4484- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGAGGAAGCCAAAACCTCCGAGGTGAACGTGGCTATGCCCATGTC
CGATGTGCACGCCGACACGCAGCCCAAGGTGTCCAAGTTCGACCAGAGCA
AGAACCCCATCCCGAAGGTGGTGCCTCCCCGCGGGTCGAAGGATGCTCGG
TCTTTCCGGCCGTCGACCCTCGCGGAGATCAACATGATGAACCGCTACGA
GCCGCTAGAGATGAAGATGTGCGGCAAGACCTACGGAATCGGCTGCGGCA
ACTCGCTGGAGGACGTGCTGCTCATCTCCGGGTGCATCCTCGCGCTCTGG
TCGTTTATTCTGGGCGTGTCGGGGCTGCTTCTCAAGTCGGCAATAGACAC
CGACAGATGTCCGAGGAAGCCAAAACCTCCGAGGTGAACGTGGCTATGCC
CATGTCCGATGTGCACGCCGACACGCAGCCCAAGGTGTCCAAGTTCGACC
AGAGCAAGAACCCCATCCCGAAGGTGGTGCCTCCCCGCGGGTCGAAGGAT
GCTCGGTCTTTCCGGCCGTCGACCCTCGCGGAGATCAACATGATGAACCG
CTACGAGCCGCTAGAGATGAAGATGTGCGGCAAGACCTACGGAATCGGCT
GCGGCAACTCGCTGGAGGACGTGCTGCTCATCTCCGGGTGCATCCTCGCG
CTCTGGTCGTTTATTCTGGGCGTGTCGGGGCTGCTTCTCAAGTCGGCAAT
AGACACCGACAGGAACCACACCGCACTCTGGGTGTACTTCTGGATCTTCA
TCCTCGGCGCCTTCTTGTTGGGCGGCATGATCGCAACGGGGCAGGTTGAG
CGCTTCCGCGGAGAGGCGGAGGCGGCCCAGAAGCAGCACGACGAAGACGA
GGCGAAGGCAATGGCCGCCTAAGAACCACACCGCACTCTGGGTGTACTTC
TGGATCTTCATCCTCGGCGCCTTCTTGTTGGGCGGCATGATCGCAACGGG
GCAGGTTGAGCGCTTCCGCGGAGAGGCGGAGGCGGCCCAGAAGCAGCACG
ACGAAGACGAGGCGAAGGCAATGGCCGCCTAA
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