Homology
BLAST of mRNA_L-elsbetiae_contig20584.6206.1 vs. uniprot
Match:
D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)
HSP 1 Score: 154 bits (388), Expect = 1.880e-45
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 1
Query: 1 VKQMNNRRDFAHVRRMLQEAEEHWEGATLKMYSCCIGYMGRGGNWQGAMDVLNQMHRSGKEPDAFCINDGMNACKRAGKYRKALEVFELARDVWG 285
VKQM NRRDF V ++L EAE +GAT KMYSCCIGYMG+GGNW+GA+DVL++MH G +PDAFCINDGMNACKRA KY KAL VFE ARDVWG
Sbjct: 10 VKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWG 104
BLAST of mRNA_L-elsbetiae_contig20584.6206.1 vs. uniprot
Match:
A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)
HSP 1 Score: 154 bits (389), Expect = 1.380e-41
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 1
Query: 1 VKQMNNRRDFAHVRRMLQEAEEHWEGATLKMYSCCIGYMGRGGNWQGAMDVLNQMHRSGKEPDAFCINDGMNACKRAGKYRKALEVFELARDVWG 285
VKQM NRRDF V ++L EAE EGAT KMYSCCIGYMG+GGNW+GA+DVL++MH G +PDAFCINDGMNACKRA KY KAL VFE ARDVWG
Sbjct: 197 VKQMKNRRDFGAVLKLLHEAERTGEGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWG 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20584.6206.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.88e-45 / Id = 73.68 Expect = 1.38e-41 / Id = 74.74 Sequence D7FKL0_ECTSI A0A6H5KIA5_9PHAE
Match Name E-value Identity Description
D7FKL0_ECTSI 1.880e-45 73.68 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA5_9PHAE 1.380e-41 74.74 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 147.1
Seed ortholog evalue 4e-33
Seed eggNOG ortholog 2880.D7FKL0
KEGG ko ko:K17710
Hectar predicted targeting category other localisation
EggNOG free text desc. endonuclease activity
EggNOG OGs KOG4197@1,KOG4197@2759
Ec32 ortholog description Pentatricopeptide repeat
Ec32 ortholog Ec-09_000630.1
COG Functional cat. S
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko03016,ko03029
Exons 1
Model size 285
Cds size 276
Stop 0
Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815848.4120116-CDS-L-elsbetiae_contig20584:453..729 1622815848.4120116-CDS-L-elsbetiae_contig20584:453..729 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig20584 454..729 -
1691683143.8947265-CDS-L-elsbetiae_contig20584:453..729 1691683143.8947265-CDS-L-elsbetiae_contig20584:453..729 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig20584 454..729 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815848.4219685-UTR-L-elsbetiae_contig20584:729..738 1622815848.4219685-UTR-L-elsbetiae_contig20584:729..738 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig20584 730..738 -
1691683143.9092844-UTR-L-elsbetiae_contig20584:729..738 1691683143.9092844-UTR-L-elsbetiae_contig20584:729..738 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig20584 730..738 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig20584.6206.1
>prot_L-elsbetiae_contig20584.6206.1 ID=prot_L-elsbetiae_contig20584.6206.1|Name=mRNA_L-elsbetiae_contig20584.6206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MNNRRDFAHVRRMLQEAEEHWEGATLKMYSCCIGYMGRGGNWQGAMDVLN QMHRSGKEPDAFCINDGMNACKRAGKYRKALEVFELARDVWG back to top mRNA from alignment at L-elsbetiae_contig20584:454..738-
Legend: UTR CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20584.6206.1 ID=mRNA_L-elsbetiae_contig20584.6206.1|Name=mRNA_L-elsbetiae_contig20584.6206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=285bp|location=Sequence derived from alignment at L-elsbetiae_contig20584:454..738- (Laminarionema elsbetiae ELsaHSoW15)GTGAAGCAG ATGAATAACAGGCGAGACTTCGCCCACGTCCGGCGGATGCT
GCAGGAGGCCGAGGAGCACTGGGAGGGGGCCACCCTCAAGATGTACTCGT
GCTGCATCGGGTACATGGGCAGGGGGGGCAACTGGCAAGGAGCCATGGAT
GTCCTGAACCAGATGCACAGGTCGGGGAAGGAGCCCGACGCCTTCTGCAT
CAACGACGGGATGAACGCTTGCAAGAGGGCGGGCAAGTACAGAAAGGCCC
TGGAGGTGTTCGAGCTGGCGAGGGACGTGTGGGGC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig20584:454..738-
>mRNA_L-elsbetiae_contig20584.6206.1 ID=mRNA_L-elsbetiae_contig20584.6206.1|Name=mRNA_L-elsbetiae_contig20584.6206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig20584:454..738- (Laminarionema elsbetiae ELsaHSoW15) ATGAATAACAGGCGAGACTTCGCCCACGTCCGGCGGATGCTGCAGGAGGC CGAGGAGCACTGGGAGGGGGCCACCCTCAAGATGTACTCGTGCTGCATCG GGTACATGGGCAGGGGGGGCAACTGGCAAGGAGCCATGGATGTCCTGAAC CAGATGCACAGGTCGGGGAAGGAGCCCGACGCCTTCTGCATCAACGACGG GATGAACGCTTGCAAGAGGGCGGGCAAGTACAGAAAGGCCCTGGAGGTGT TCGAGCTGGCGAGGGACGTGTGGGGCATGAATAACAGGCGAGACTTCGCC CACGTCCGGCGGATGCTGCAGGAGGCCGAGGAGCACTGGGAGGGGGCCAC CCTCAAGATGTACTCGTGCTGCATCGGGTACATGGGCAGGGGGGGCAACT GGCAAGGAGCCATGGATGTCCTGAACCAGATGCACAGGTCGGGGAAGGAG CCCGACGCCTTCTGCATCAACGACGGGATGAACGCTTGCAAGAGGGCGGG CAAGTACAGAAAGGCCCTGGAGGTGTTCGAGCTGGCGAGGGACGTGTGGG GC back to top