mRNA_L-elsbetiae_contig20584.6206.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20584.6206.1
Unique NamemRNA_L-elsbetiae_contig20584.6206.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20584.6206.1 vs. uniprot
Match: D7FKL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL0_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.880e-45
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 VKQMNNRRDFAHVRRMLQEAEEHWEGATLKMYSCCIGYMGRGGNWQGAMDVLNQMHRSGKEPDAFCINDGMNACKRAGKYRKALEVFELARDVWG 285
            VKQM NRRDF  V ++L EAE   +GAT KMYSCCIGYMG+GGNW+GA+DVL++MH  G +PDAFCINDGMNACKRA KY KAL VFE ARDVWG
Sbjct:   10 VKQMKNRRDFGAVLKLLHEAERRGDGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWG 104
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BLAST of mRNA_L-elsbetiae_contig20584.6206.1 vs. uniprot
Match: A0A6H5KIA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.380e-41
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:    1 VKQMNNRRDFAHVRRMLQEAEEHWEGATLKMYSCCIGYMGRGGNWQGAMDVLNQMHRSGKEPDAFCINDGMNACKRAGKYRKALEVFELARDVWG 285
            VKQM NRRDF  V ++L EAE   EGAT KMYSCCIGYMG+GGNW+GA+DVL++MH  G +PDAFCINDGMNACKRA KY KAL VFE ARDVWG
Sbjct:  197 VKQMKNRRDFGAVLKLLHEAERTGEGATPKMYSCCIGYMGKGGNWEGALDVLDRMHALGNKPDAFCINDGMNACKRARKYDKALWVFEQARDVWG 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20584.6206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKL0_ECTSI1.880e-4573.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIA5_9PHAE1.380e-4174.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20584contigL-elsbetiae_contig20584:454..738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue4e-33
Seed eggNOG ortholog2880.D7FKL0
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-09_000630.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Exons1
Model size285
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815848.4120116-CDS-L-elsbetiae_contig20584:453..7291622815848.4120116-CDS-L-elsbetiae_contig20584:453..729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20584 454..729 -
1691683143.8947265-CDS-L-elsbetiae_contig20584:453..7291691683143.8947265-CDS-L-elsbetiae_contig20584:453..729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20584 454..729 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815848.4219685-UTR-L-elsbetiae_contig20584:729..7381622815848.4219685-UTR-L-elsbetiae_contig20584:729..738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20584 730..738 -
1691683143.9092844-UTR-L-elsbetiae_contig20584:729..7381691683143.9092844-UTR-L-elsbetiae_contig20584:729..738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20584 730..738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20584.6206.1prot_L-elsbetiae_contig20584.6206.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20584 454..729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20584.6206.1

>prot_L-elsbetiae_contig20584.6206.1 ID=prot_L-elsbetiae_contig20584.6206.1|Name=mRNA_L-elsbetiae_contig20584.6206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MNNRRDFAHVRRMLQEAEEHWEGATLKMYSCCIGYMGRGGNWQGAMDVLN
QMHRSGKEPDAFCINDGMNACKRAGKYRKALEVFELARDVWG
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mRNA from alignment at L-elsbetiae_contig20584:454..738-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20584.6206.1 ID=mRNA_L-elsbetiae_contig20584.6206.1|Name=mRNA_L-elsbetiae_contig20584.6206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=285bp|location=Sequence derived from alignment at L-elsbetiae_contig20584:454..738- (Laminarionema elsbetiae ELsaHSoW15)
GTGAAGCAGATGAATAACAGGCGAGACTTCGCCCACGTCCGGCGGATGCT
GCAGGAGGCCGAGGAGCACTGGGAGGGGGCCACCCTCAAGATGTACTCGT
GCTGCATCGGGTACATGGGCAGGGGGGGCAACTGGCAAGGAGCCATGGAT
GTCCTGAACCAGATGCACAGGTCGGGGAAGGAGCCCGACGCCTTCTGCAT
CAACGACGGGATGAACGCTTGCAAGAGGGCGGGCAAGTACAGAAAGGCCC
TGGAGGTGTTCGAGCTGGCGAGGGACGTGTGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20584:454..738-

>mRNA_L-elsbetiae_contig20584.6206.1 ID=mRNA_L-elsbetiae_contig20584.6206.1|Name=mRNA_L-elsbetiae_contig20584.6206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig20584:454..738- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATAACAGGCGAGACTTCGCCCACGTCCGGCGGATGCTGCAGGAGGC
CGAGGAGCACTGGGAGGGGGCCACCCTCAAGATGTACTCGTGCTGCATCG
GGTACATGGGCAGGGGGGGCAACTGGCAAGGAGCCATGGATGTCCTGAAC
CAGATGCACAGGTCGGGGAAGGAGCCCGACGCCTTCTGCATCAACGACGG
GATGAACGCTTGCAAGAGGGCGGGCAAGTACAGAAAGGCCCTGGAGGTGT
TCGAGCTGGCGAGGGACGTGTGGGGCATGAATAACAGGCGAGACTTCGCC
CACGTCCGGCGGATGCTGCAGGAGGCCGAGGAGCACTGGGAGGGGGCCAC
CCTCAAGATGTACTCGTGCTGCATCGGGTACATGGGCAGGGGGGGCAACT
GGCAAGGAGCCATGGATGTCCTGAACCAGATGCACAGGTCGGGGAAGGAG
CCCGACGCCTTCTGCATCAACGACGGGATGAACGCTTGCAAGAGGGCGGG
CAAGTACAGAAAGGCCCTGGAGGTGTTCGAGCTGGCGAGGGACGTGTGGG
GC
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