prot_L-elsbetiae_contig2015.6060.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig2015.6060.1
Unique Name	prot_L-elsbetiae_contig2015.6060.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	182

Homology

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BLAST of mRNA_L-elsbetiae_contig2015.6060.1 vs. uniprot
Match: D8LTM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM4_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 7.360e-61
Identity = 111/152 (73.03%), Postives = 123/152 (80.92%), Query Frame = 0

Query:    1 MVGAAMGILTLVGHATDALLNAVGLAVLLYGRRKPLQGTMCRLVKRLCLASLAMAGWLLGMTVIGFLVAVKGPIGAAAVAFYSD-LSLRCRSSVSVSVDYAYAMTTLTILCQFFIGIVALP--TLSSLRSRSRGRCCKWRCCQCCRLVNPVG 149
            MVGA MGILT+VG+ATD LLNAVGLAVLLYGRRKPLQ   CR+VKRLCLASLAMAGWLLG T+IGFL+AVKGPIGAAAVAFYS+   L C +SVSVSVDYAYAM TLT+LCQFFIGIVALP  + SS ++R R  CC+W         NP G
Sbjct:   70 MVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPQNRRRRFCCRW---------NPAG 212

[Close]

BLAST of mRNA_L-elsbetiae_contig2015.6060.1 vs. uniprot
Match: A0A6H5JU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU38_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.350e-52
Identity = 106/153 (69.28%), Postives = 118/153 (77.12%), Query Frame = 0

Query:    1 MVGAAMGILTLVGHATDALLNAVGLAVLLYGRRKPLQGTMCRLVKRLCLASLAMAGWLLGMTVIGFLVAVKGPIGAAAVAFYSD-LSLRCRSSVSVSVDYAYAMTTLTILCQFFIGIVALP--TLSSLRSRSRGR-CCKWRCCQCCRLVNPVG 149
            MVGA MGILT+VG+ATD LLNAVGLAVLLYGRRKPLQ   CR+VKRLCLASLAMAGWL+GMTVIGFL+AVKGPIGAAAVAFYS+   L C +SVSV       M TLT+LCQFFIGIVALP  + SS ++R R R CC+W         NP G
Sbjct:  273 MVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLMGMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVXXXXXXXMATLTVLCQFFIGIVALPKPSRSSPQNRRRRRFCCRW---------NPAG 416

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig2015.6060.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig2015.6060.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LTM4_ECTSI	7.360e-61	73.03	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JU38_9PHAE	2.350e-52	69.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 32..51
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 99..122
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 123..182
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 52..79
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 80..98
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..31
None	No IPR available	TMHMM	TMhelix		coord: 100..122
None	No IPR available	TMHMM	TMhelix		coord: 48..70
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig2015	contig	L-elsbetiae_contig2015:2974..4520 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig2015.6060.1	mRNA_L-elsbetiae_contig2015.6060.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig2015 2974..6001 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig2015.6060.1 ID=prot_L-elsbetiae_contig2015.6060.1|Name=mRNA_L-elsbetiae_contig2015.6060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MVGAAMGILTLVGHATDALLNAVGLAVLLYGRRKPLQGTMCRLVKRLCLA
SLAMAGWLLGMTVIGFLVAVKGPIGAAAVAFYSDLSLRCRSSVSVSVDYA
YAMTTLTILCQFFIGIVALPTLSSLRSRSRGRCCKWRCCQCCRLVNPVGC
CCFFLRRGMSCCFPSPSSSSSASHPFHGEPPC