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Homology
BLAST of mRNA_L-elsbetiae_contig2015.6060.1 vs. uniprot
Match: D8LTM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM4_ECTSI) HSP 1 Score: 246 bits (627), Expect = 1.550e-77 Identity = 131/180 (72.78%), Postives = 147/180 (81.67%), Query Frame = 1
Query: 223 PDLGIWVGWRQAVANDEEAAVLNLEDLSMVGAAMGILTLVGHATDALLNAVGLAVLLYGRRKPLQGTMCRLVKRLCLASLAMAGWLLGMTVIGFLVAVKGPIGAAAVAFYSD-LSLRCRSSVSVSVDYAYAMTTLTILCQFFIGIVALP--TLSSLRSRSRGRCCKWRCCQCCRLVNPVG 753
PDLG+WVGWRQAVAN +EA NLE++SMVGA MGILT+VG+ATD LLNAVGLAVLLYGRRKPLQ CR+VKRLCLASLAMAGWLLG T+IGFL+AVKGPIGAAAVAFYS+ L C +SVSVSVDYAYAM TLT+LCQFFIGIVALP + SS ++R R CC+W NP G
Sbjct: 42 PDLGVWVGWRQAVANSDEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPQNRRRRFCCRW---------NPAG 212
BLAST of mRNA_L-elsbetiae_contig2015.6060.1 vs. uniprot
Match: A0A6H5JU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU38_9PHAE) HSP 1 Score: 231 bits (588), Expect = 3.740e-69 Identity = 127/181 (70.17%), Postives = 142/181 (78.45%), Query Frame = 1
Query: 223 PDLGIWVGWRQAVANDEEAAVLNLEDLSMVGAAMGILTLVGHATDALLNAVGLAVLLYGRRKPLQGTMCRLVKRLCLASLAMAGWLLGMTVIGFLVAVKGPIGAAAVAFYSD-LSLRCRSSVSVSVDYAYAMTTLTILCQFFIGIVALP--TLSSLRSRSRGR-CCKWRCCQCCRLVNPVG 753
PDLG+WVGWRQAVAN EEA NLE++SMVGA MGILT+VG+ATD LLNAVGLAVLLYGRRKPLQ CR+VKRLCLASLAMAGWL+GMTVIGFL+AVKGPIGAAAVAFYS+ L C +SVSV M TLT+LCQFFIGIVALP + SS ++R R R CC+W NP G
Sbjct: 245 PDLGVWVGWRQAVANSEEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLMGMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVXXXXXXXMATLTVLCQFFIGIVALPKPSRSSPQNRRRRRFCCRW---------NPAG 416
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-28_003540.1 |
| Exons | 4 |
| Model size | 852 |
| Cds size | 546 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815833.7193995-CDS-L-elsbetiae_contig2015:2973..3243 | 1622815833.7193995-CDS-L-elsbetiae_contig2015:2973..3243 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2015 2974..3243 - |
| 1691683133.5355513-CDS-L-elsbetiae_contig2015:2973..3243 | 1691683133.5355513-CDS-L-elsbetiae_contig2015:2973..3243 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2015 2974..3243 - |
| 1622815833.7304056-CDS-L-elsbetiae_contig2015:3715..3889 | 1622815833.7304056-CDS-L-elsbetiae_contig2015:3715..3889 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2015 3716..3889 - |
| 1691683133.54447-CDS-L-elsbetiae_contig2015:3715..3889 | 1691683133.54447-CDS-L-elsbetiae_contig2015:3715..3889 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2015 3716..3889 - |
| 1622815833.7401934-CDS-L-elsbetiae_contig2015:4418..4520 | 1622815833.7401934-CDS-L-elsbetiae_contig2015:4418..4520 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2015 4419..4520 - |
| 1691683133.5534568-CDS-L-elsbetiae_contig2015:4418..4520 | 1691683133.5534568-CDS-L-elsbetiae_contig2015:4418..4520 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig2015 4419..4520 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815833.749829-UTR-L-elsbetiae_contig2015:4520..4529 | 1622815833.749829-UTR-L-elsbetiae_contig2015:4520..4529 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2015 4521..4529 - |
| 1691683133.563043-UTR-L-elsbetiae_contig2015:4520..4529 | 1691683133.563043-UTR-L-elsbetiae_contig2015:4520..4529 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2015 4521..4529 - |
| 1622815833.762995-UTR-L-elsbetiae_contig2015:5704..6001 | 1622815833.762995-UTR-L-elsbetiae_contig2015:5704..6001 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2015 5705..6001 - |
| 1691683133.5727472-UTR-L-elsbetiae_contig2015:5704..6001 | 1691683133.5727472-UTR-L-elsbetiae_contig2015:5704..6001 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig2015 5705..6001 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2015.6060.1 >prot_L-elsbetiae_contig2015.6060.1 ID=prot_L-elsbetiae_contig2015.6060.1|Name=mRNA_L-elsbetiae_contig2015.6060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MVGAAMGILTLVGHATDALLNAVGLAVLLYGRRKPLQGTMCRLVKRLCLA
SLAMAGWLLGMTVIGFLVAVKGPIGAAAVAFYSDLSLRCRSSVSVSVDYA
YAMTTLTILCQFFIGIVALPTLSSLRSRSRGRCCKWRCCQCCRLVNPVGC
CCFFLRRGMSCCFPSPSSSSSASHPFHGEPPC back to topmRNA from alignment at L-elsbetiae_contig2015:2974..6001- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig2015.6060.1 ID=mRNA_L-elsbetiae_contig2015.6060.1|Name=mRNA_L-elsbetiae_contig2015.6060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3028bp|location=Sequence derived from alignment at L-elsbetiae_contig2015:2974..6001- (Laminarionema elsbetiae ELsaHSoW15)
CGCGAAGCGAACCACGTTAATAGCTGCTAATTATCAGCTAGCCAATGTTG
CACCCGTCATCACCGACGGTATATCCGTAGGAAAGTGTCTGAGCGGGATG
TTATTTTGGCCCATTGTCTCTGCCGGACAAATAGAAGGTCACGCGATCAA
CATTGTGGCCAAAATAGACTGACACCAGCGAGTGATGCCGTGCGTCTTTC
AACCTGCGGTTTGTTTTCTCAGCCCGACCTTGGTATTTGGGTGGGGTGGC
GGCAAGCCGTGGCTAACGATGAAGAAGCGGCGGTTTTGAATCTGGAGGTG
AGGTTAATAATTCGAAGTCGTGATGCGGGCATGAGGATTAGGGTTGAGAT
TGACTTCGTGCTGCCGTCCATGGAATTCAGCAAACATATATCTTTCTTTG
TGACCACGGATCAGAGCTCTGGCAACGATGCCCCTCGAGCGCTGCTGGTA
TACTTTTATGGACAAAAACAAATGCGTGCGTAGTTTCACGTTTGTTTTTT
TGTCCTTCTTCCATTTGTCGTGACTACTTTCCTGCAAAGCGCCCGCCCCC
CTTTGCCGTGAAATCGTTTTTTTCAAGTGTTTATTTTGCGTTACGAGATA
TCGTGCTTTCAAGTGATGGACAGTTAAGTACAGGTATAAAAGTTCAAATG
TCACTCTTTTACTCACTACTTCCGTTTTTTTTTGTGTGAGGATCATTTTT
TCTGTTTGTTGCTCAGTTCAGCACCGATCGCGTCAGTTGTTCCAAAAGCA
TTTTTATGAGCAAGTGATGTTCTTGTTTTGTGTTCTGGTCCGGCACCAAT
GCCCTACCTAGTGGTGGGACTTTTTTGGTCGAGAATAAGTTAGGTTGGCG
TTGCCCCTGGGTGGCTGTCTGGTCAAAATTTACTTTTTTTTTCCAAGGGG
GTTTGGGGTGTTTTTGCTATCGCCTTCTACGCGGGCTTGGTAGTCTTAGC
GATGGGTGTCAGAAGTATTTAATGTTGGGAATCGATGGGCACTTGATCAT
CCCAAAGACACAACGGAAGAAAATTCATGTAAAATTCATGTATTGCATAG
CGTGTCTCTGTTCTTTCCGAGCCAGTCAGTTTAGTCTATACCCTTTGAGG
GTAAGTTATCCTGTGACCACGAGAATTGACCGCGTCAGTGTTGGATTTGT
ACACGGACTCACGGAGGTGTACTGGATAGAGAGATCGGAACGGTGTTTAA
TGTGAAGACAACGACAAGTTAGAACGGCTGTGGGTTGTAGTTGTTGCACT
TAGCTTGTTGGATCCAGTGAACCTTCCTTCCACTTCAAGGCGGGGCAATT
TCTTGCCCATAATTTGCCATTATCGAGCTTTTTGGTGCCTTGCACGCCAT
ACAAGCGGCTTCCCATATGTGGCTGCCTCGCGCACCCACGGACGGATATG
TGTGTACCGATTCCTGCCGTCTTGGCCCCGTTCGTGGTCATATCTATCTT
TTCAAAATATTAATATTTTCAGGACCTGAGTATGGTGGGAGCCGCGATGG
GAATTCTGACGCTGGTGGGACATGCCACGGACGCCCTGCTTAATGCTGTT
GGACTCGCCGTCCTCTTGTACGGTCGGCGCAAGGTATGTATGTAGACTGC
CTTTTAGTTGTGTATTTTGTCATACCATGCAGGTAAATTATGTACGAACA
ACAGCTTTTACCTCTTTAGCTTTGTAGTGCGCACCGAAACTTCGGTGGAT
ATTTGTTCCGGCGTATTCCACCGACAACCGTGTGGCAGAGACAGATATGA
ACGCCCGGGAACATCGCGATAGCGCTATGAAGCGCCACCAACGTAAGCAT
CACGGCACAGGAATCAGAGATATATATTGTCAGATATGCAGGCAGTAGCG
CGACCCATGTAGGCAGCACGGCACAGGAATCAGGGATGAGGAATGATCAG
ATATGCAGGCAGGCAGGCAGGTAGCGCAGGCGCGAGGGCGGCGCCATCCC
CGTGTCCTCCAGAATATCAGAATATCACTCTAAATTTATTTCGGAAATTC
CGGACAAAAAACTCAACAGAATCTCCCTTTTGTTCACCTACTGTTGCCAT
GTAAATGAAATACCCCCCTTGCTCGTCTTTTCTTGTTTGGTTCACGGCTG
GGCGTGAAGCAGCCCTTGCAGGGGACCATGTGCCGCCTGGTGAAGCGGCT
TTGCCTCGCATCTCTGGCGATGGCGGGGTGGCTGCTGGGCATGACCGTCA
TCGGGTTCCTGGTGGCCGTCAAGGGTCCCATCGGCGCCGCCGCGGTGGCC
TTCTACTCCGACCTCAGCTTGCGCTGCAGAAGCTCGGTGAGCACGGGCTG
GCTGGATCGGCCGCGCAGAGCGTTGGTATGACTTGACCTCTTGAGGACGA
AGGCAAAGACGGTTCCATTCTAGAATAGAGACCCGAAGTACGCATATTTA
GGCACATACAGCCCCGGGTTACTTTGAAATCGCTTGGAATTGGAACTGTT
GGCGAAGCCCGCTCGAAATGTTCAATGTTCGCCGTTTTTATTTTGCCCTC
TCACGTTTTCACGTGGTGGTAGGTAACAACACCCACCACTCGTTTTCGCC
GGTGGTAAATAGGCTGTTTTTTTTAAGCCCCGTTCTTCGTTTTGGGATAT
GTTTCCTCTCCAGCACGCTTGCACACGCGGGCCCCCCGCTCTATCCCGTG
TTCTTTAAAAACGAAGAAAATAGGGGGCCTGTCTTGTGTGTGGATGTCCG
TGTCCATGACCAAGTCCTCGTACGCACGTGCTGCTCTCTCTCTCTCTCAT
GATCTCAGGTATCTGTTAGCGTGGATTACGCGTATGCGATGACGACCCTC
ACGATCCTCTGCCAGTTCTTCATCGGGATTGTAGCGCTGCCGACACTGTC
GTCATTGCGTAGTCGAAGCCGCGGCCGCTGCTGTAAGTGGCGGTGCTGCC
AGTGCTGCCGGTTGGTCAACCCCGTCGGCTGCTGCTGTTTCTTCTTGCGC
CGAGGAATGAGCTGCTGCTTTCCCTCTCCTTCGTCTTCCTCCTCGGCCTC
CCATCCCTTTCACGGCGAGCCACCGTGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig2015:2974..6001- >mRNA_L-elsbetiae_contig2015.6060.1 ID=mRNA_L-elsbetiae_contig2015.6060.1|Name=mRNA_L-elsbetiae_contig2015.6060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig2015:2974..6001- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGGAGCCGCGATGGGAATTCTGACGCTGGTGGGACATGCCACGGA
CGCCCTGCTTAATGCTGTTGGACTCGCCGTCCTCTTGTACGGTCGGCGCA
AGATGGTGGGAGCCGCGATGGGAATTCTGACGCTGGTGGGACATGCCACG
GACGCCCTGCTTAATGCTGTTGGACTCGCCGTCCTCTTGTACGGTCGGCG
CAAGCCCTTGCAGGGGACCATGTGCCGCCTGGTGAAGCGGCTTTGCCTCG
CATCTCTGGCGATGGCGGGGTGGCTGCTGGGCATGACCGTCATCGGGTTC
CTGGTGGCCGTCAAGGGTCCCATCGGCGCCGCCGCGGTGGCCTTCTACTC
CGACCTCAGCTTGCGCTGCAGAAGCTCGCCCTTGCAGGGGACCATGTGCC
GCCTGGTGAAGCGGCTTTGCCTCGCATCTCTGGCGATGGCGGGGTGGCTG
CTGGGCATGACCGTCATCGGGTTCCTGGTGGCCGTCAAGGGTCCCATCGG
CGCCGCCGCGGTGGCCTTCTACTCCGACCTCAGCTTGCGCTGCAGAAGCT
CGGTATCTGTTAGCGTGGATTACGCGTATGCGATGACGACCCTCACGATC
CTCTGCCAGTTCTTCATCGGGATTGTAGCGCTGCCGACACTGTCGTCATT
GCGTAGTCGAAGCCGCGGCCGCTGCTGTAAGTGGCGGTGCTGCCAGTGCT
GCCGGTTGGTCAACCCCGTCGGCTGCTGCTGTTTCTTCTTGCGCCGAGGA
ATGAGCTGCTGCTTTCCCTCTCCTTCGTCTTCCTCCTCGGCCTCCCATCC
CTTTCACGGCGAGCCACCGTGCGTATCTGTTAGCGTGGATTACGCGTATG
CGATGACGACCCTCACGATCCTCTGCCAGTTCTTCATCGGGATTGTAGCG
CTGCCGACACTGTCGTCATTGCGTAGTCGAAGCCGCGGCCGCTGCTGTAA
GTGGCGGTGCTGCCAGTGCTGCCGGTTGGTCAACCCCGTCGGCTGCTGCT
GTTTCTTCTTGCGCCGAGGAATGAGCTGCTGCTTTCCCTCTCCTTCGTCT
TCCTCCTCGGCCTCCCATCCCTTTCACGGCGAGCCACCGTGC back to top
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