prot_L-elsbetiae_contig10634.603.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10634.603.1
Unique Nameprot_L-elsbetiae_contig10634.603.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length196
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10634.603.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.930e-17
Identity = 52/85 (61.18%), Postives = 55/85 (64.71%), Query Frame = 0 
Query:  103 KICKYLWLPVNGLGRTRYGPFSLGNVRAGGVAGVEIRKAFRRRLEEGTAGGSSRASSDGGGRGRRMAEAPGPGTGKRRDAEAGGM 187
            KICKYL L VN L RT YGPFSLG VRAGGVA VEI KAF RRLE+G            G  GRR+   PGPG G RR+ EAG M
Sbjct:   42 KICKYLCLTVNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGGAXXXXXGTSGRRLG--PGPGNGMRRELEAGRM 124
[Close]
BLAST of mRNA_L-elsbetiae_contig10634.603.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.160e-16
Identity = 58/124 (46.77%), Postives = 68/124 (54.84%), Query Frame = 0 
Query:    2 KDPSMVRLSGRIARSGMASGREAEGLVEAAGGDDERNTGADPGDYVGPRDIVKA------------------KGRALERPEDHMLKLWM----------GHDPEEGASVVDRLAELEMPDTLMP 97
            KDPS++RLS RIARSG+AS REAE +VEA        T   P   VGPRDIVK                   +G+ LERPE H  KLWM           HDPE   +V DRL +L++PDTLMP
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMP 231
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10634.603.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J790_9PHAE5.930e-1761.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDE8_ECTSI1.160e-1646.77RNA pseudouridylate synthase domain-containing pro... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10634contigL-elsbetiae_contig10634:3557..5665 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10634.603.1mRNA_L-elsbetiae_contig10634.603.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10634 3285..5665 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10634.603.1 ID=prot_L-elsbetiae_contig10634.603.1|Name=mRNA_L-elsbetiae_contig10634.603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
MKDPSMVRLSGRIARSGMASGREAEGLVEAAGGDDERNTGADPGDYVGPR
DIVKAKGRALERPEDHMLKLWMGHDPEEGASVVDRLAELEMPDTLMPNRQ
IRKICKYLWLPVNGLGRTRYGPFSLGNVRAGGVAGVEIRKAFRRRLEEGT
AGGSSRASSDGGGRGRRMAEAPGPGTGKRRDAEAGGMSPPWQGDSS
back to top