mRNA_L-elsbetiae_contig10634.603.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10634.603.1
Unique NamemRNA_L-elsbetiae_contig10634.603.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10634.603.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.170e-16
Identity = 52/85 (61.18%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  579 KICKYLWLPVNGLGRTRYGPFSLGNVRAGGVAGVEIRKAFRRRLEEGTAGGSSRASSDGGGRGRRMAEAPGPGTGKRRDAEAGGM 833
            KICKYL L VN L RT YGPFSLG VRAGGVA VEI KAF RRLE+G            G  GRR+   PGPG G RR+ EAG M
Sbjct:   42 KICKYLCLTVNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGGAXXXXXGTSGRRLG--PGPGNGMRRELEAGRM 124
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BLAST of mRNA_L-elsbetiae_contig10634.603.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.270e-15
Identity = 58/124 (46.77%), Postives = 68/124 (54.84%), Query Frame = 3 
Query:  276 KDPSMVRLSGRIARSGMASGREAEGLVEAAGGDDERNTGADPGDYVGPRDIVKA------------------KGRALERPEDHMLKLWM----------GHDPEEGASVVDRLAELEMPDTLMP 563
            KDPS++RLS RIARSG+AS REAE +VEA        T   P   VGPRDIVK                   +G+ LERPE H  KLWM           HDPE   +V DRL +L++PDTLMP
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMP 231
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BLAST of mRNA_L-elsbetiae_contig10634.603.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.540e-7
Identity = 45/111 (40.54%), Postives = 52/111 (46.85%), Query Frame = 3 
Query:  270 RMKDPSMVRLSGRIARSGMASGREAEGLVEAAGGDDERNTGADPGDYVGPRDIVK------------------------------------AKGRALERPEDHMLKLWMGH 494
            ++KDPS++RLS RIARSG+AS REAE +VEA        T   P   VGPRDIVK                                    A G+ LERPE H  KLWM H
Sbjct:  106 KIKDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFLQLGNGADYRFFVQVDFDALLLCLSYLSDTALGKVLERPESHTPKLWMVH 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10634.603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J790_9PHAE4.170e-1661.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDE8_ECTSI1.270e-1546.77RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J9J6_9PHAE3.540e-740.54S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10634contigL-elsbetiae_contig10634:3285..5665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size862
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10634.603.1prot_L-elsbetiae_contig10634.603.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10634 3557..5665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.101306-UTR-L-elsbetiae_contig10634:3284..35561622815284.101306-UTR-L-elsbetiae_contig10634:3284..3556Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10634 3285..3556 +
1691682816.3192737-UTR-L-elsbetiae_contig10634:3284..35561691682816.3192737-UTR-L-elsbetiae_contig10634:3284..3556Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10634 3285..3556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.1109352-CDS-L-elsbetiae_contig10634:3556..37241622815284.1109352-CDS-L-elsbetiae_contig10634:3556..3724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10634 3557..3724 +
1691682816.32804-CDS-L-elsbetiae_contig10634:3556..37241691682816.32804-CDS-L-elsbetiae_contig10634:3556..3724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10634 3557..3724 +
1622815284.1217487-CDS-L-elsbetiae_contig10634:3992..41151622815284.1217487-CDS-L-elsbetiae_contig10634:3992..4115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10634 3993..4115 +
1691682816.3383129-CDS-L-elsbetiae_contig10634:3992..41151691682816.3383129-CDS-L-elsbetiae_contig10634:3992..4115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10634 3993..4115 +
1622815284.1334043-CDS-L-elsbetiae_contig10634:5368..56651622815284.1334043-CDS-L-elsbetiae_contig10634:5368..5665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10634 5369..5665 +
1691682816.349395-CDS-L-elsbetiae_contig10634:5368..56651691682816.349395-CDS-L-elsbetiae_contig10634:5368..5665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10634 5369..5665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10634.603.1

>prot_L-elsbetiae_contig10634.603.1 ID=prot_L-elsbetiae_contig10634.603.1|Name=mRNA_L-elsbetiae_contig10634.603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
MKDPSMVRLSGRIARSGMASGREAEGLVEAAGGDDERNTGADPGDYVGPR
DIVKAKGRALERPEDHMLKLWMGHDPEEGASVVDRLAELEMPDTLMPNRQ
IRKICKYLWLPVNGLGRTRYGPFSLGNVRAGGVAGVEIRKAFRRRLEEGT
AGGSSRASSDGGGRGRRMAEAPGPGTGKRRDAEAGGMSPPWQGDSS
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mRNA from alignment at L-elsbetiae_contig10634:3285..5665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10634.603.1 ID=mRNA_L-elsbetiae_contig10634.603.1|Name=mRNA_L-elsbetiae_contig10634.603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2381bp|location=Sequence derived from alignment at L-elsbetiae_contig10634:3285..5665+ (Laminarionema elsbetiae ELsaHSoW15)
TAGAGCGGCACGATCATGTTGACACCCTTGGTTTGAAAAGAGCGTTTTCG
GAGGGGGAGAGGCGGTGTGTTTGGGGGAGATATCTGCACCGTCGTTTGAG
TAAATGTCCATCACTGAGACTTGTTCTTGGTAAGTGGTCGGACCTTCTTC
CAAGTGCCTAACAGTCGAGTCGTGGGACATGTGTTTAGATATTCCATCCA
CCTCTTTTCGCTCCCGTGAGTTGTCTATGTTCCGAAAGCGAGAGAAGTGC
GGACGAGGTGCGGCGGTCGCGGATGAAGGACCCTTCCATGGTGCGCCTGT
CTGGCCGCATCGCGAGGTCTGGCATGGCGTCCGGTCGAGAGGCCGAGGGC
CTGGTGGAGGCGGCGGGTGGTGACGATGAACGGAACACCGGTGCAGACCC
CGGCGATTACGTGGGGCCCCGAGACATCGTCAAAGCCAAGGTCAGGTCAG
GCTTTGGTACCATTTCAATTTGGGCACTGTAGGGAACGGCATGTGCCGAC
ACTCCGTCCAGCTGTATGCCCCCAATCAGATTGGGTCAAGGTCGATCCGC
GGGTCAGCGAAATGAAATCGACATGACTTTCAGCATAGGGTTCAATAATC
TGCGCCAGCCAGGCCGTTGAGCAAACCCCGCCAATTTGTTTGATTCTGTT
TTCTGTTTGCTCCTGTCTTTGGCATGTTTTTTATTAATTGTTTGTTGTCG
AACGCCAGGGGAGGGCACTGGAGCGGCCGGAAGACCACATGCTCAAGCTG
TGGATGGGGCACGATCCGGAGGAGGGGGCGAGCGTGGTGGACAGGCTGGC
CGAGCTCGAAATGCCCGACACGCTCATGCCGGTGATAACGCGTACAAGTT
GCCTAGTGCGTTTAGCGGGGGGGGGGGGTGTTAATGGCACGCGTTCACAT
GCAGCAGTTACTTGAAGGCGGCGGTGAGGGGTACCCATTGGTCAGCATAG
GCCTTTTCCGAAGAATATATCGCATACCCCTCTGAATATCACGGAGCCTC
ACTGGGAGTTTCTGTGGGCTTTCGCAAAACGCCCGCATGATCTGACACAG
TTTTGCCACAAAATAGAGGTGTTCCAAGACTTTCGGCTTTGAAAAATTTG
ACTTTACGGAGAGGTTTTAACCCTTATAGAACCCAGTCATCACGACAGAA
AAAAGTCGCAGAAAACTGGTCGCCTATGATTTTTTTTTGCGAAGTGAGTT
TTTTCTCTCGCTTCCGTCCCTGTCCGTGGATAGCCTTAGCGTGTGTACAC
CAACTTCGACATCACCGTCGACGAGGGAAAGGAACGGCTGAACCTCTCTC
GGGATAAAAATAGTAGGCGAGCACCACAGACGGGGGTAGTGGGGGCCTTG
GGGAAAGGCACCCTTCTGTGTGACCACGGTTCAGTACTCTGTCAAGATGC
CATCGTGACCGGGAGCCCATCGAGCACTGGAAATATATGTGAAAAAAAAA
ACCCCGTCAATTCAGCCTCCACAGCTTCGCTGCCCAGCCAGGAAGGAAAG
TGTCGCCATGTTTGTACGCCAGATAACGTATGTCGGCCCCCTCCTTACCC
CTGCATTGTTCGTTCTTGTTCCCCCTCCACCTGGTTGTACGTATTTCACT
CTCTCTCCTCCCCTTCAGCATTCTGGCAATATTGTTGGTGGTCATACATA
GAAATGTGGACAACGAAACAACGCCCCGAGACCCTCTCCGCCTTGTCTTC
GGCAATCCAGCGCGTGTTCCGGCCGGGCTTTGCCTGGTTAGTTAGAGCGT
CGATGCAACAACGCACGCCTAGCGGTCCATACGTTGACGGCGAAGGTAGC
CCTCCCTCCCTCTCCCTGTGGACGGTGGATGCCGCCCCCACGACTAGGCA
ACCATAAACCCCACAACAACTAAAACTATTACAATAAAAGTCTACATGGC
TGAAAAACAACGAGAACAAGACGAAGAGGATTATCGAGATCTTTCGCAAT
GAGGGTTTGAGAATCTTAATATTTTTTCTTGACCACCAGCACGACCTAAC
AAATTCAACCACTACCCACCTATGTACCACCACCCCCCGCTCGTGTTGTT
TCTCTTTCGCTCACTTCGCGGACGCCCTGAACAGAACCGGCAAATCCGCA
AGATCTGCAAGTACCTGTGGCTGCCCGTCAACGGGCTGGGCAGGACCCGC
TACGGCCCCTTCAGCCTCGGCAATGTCCGGGCCGGCGGGGTAGCCGGCGT
GGAAATCCGGAAGGCGTTTCGGCGGCGCCTGGAGGAGGGCACCGCCGGAG
GATCATCGCGGGCAAGCAGCGACGGCGGCGGTAGGGGCAGGCGGATGGCG
GAGGCGCCGGGGCCTGGAACAGGCAAGCGCCGGGATGCGGAGGCTGGCGG
TATGTCGCCGCCGTGGCAGGGGGACTCGTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10634:3285..5665+

>mRNA_L-elsbetiae_contig10634.603.1 ID=mRNA_L-elsbetiae_contig10634.603.1|Name=mRNA_L-elsbetiae_contig10634.603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig10634:3285..5665+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGACCCTTCCATGGTGCGCCTGTCTGGCCGCATCGCGAGGTCTGG
CATGGCGTCCGGTCGAGAGGCCGAGGGCCTGGTGGAGGCGGCGGGTGGTG
ACGATGAACGGAACACCGGTGCAGACCCCGGCGATTACGTGGGGCCCCGA
GACATCGTCAAAGCCAAGATGAAGGACCCTTCCATGGTGCGCCTGTCTGG
CCGCATCGCGAGGTCTGGCATGGCGTCCGGTCGAGAGGCCGAGGGCCTGG
TGGAGGCGGCGGGTGGTGACGATGAACGGAACACCGGTGCAGACCCCGGC
GATTACGTGGGGCCCCGAGACATCGTCAAAGCCAAGGGGAGGGCACTGGA
GCGGCCGGAAGACCACATGCTCAAGCTGTGGATGGGGCACGATCCGGAGG
AGGGGGCGAGCGTGGTGGACAGGCTGGCCGAGCTCGAAATGCCCGACACG
CTCATGCCGGGGAGGGCACTGGAGCGGCCGGAAGACCACATGCTCAAGCT
GTGGATGGGGCACGATCCGGAGGAGGGGGCGAGCGTGGTGGACAGGCTGG
CCGAGCTCGAAATGCCCGACACGCTCATGCCGAACCGGCAAATCCGCAAG
ATCTGCAAGTACCTGTGGCTGCCCGTCAACGGGCTGGGCAGGACCCGCTA
CGGCCCCTTCAGCCTCGGCAATGTCCGGGCCGGCGGGGTAGCCGGCGTGG
AAATCCGGAAGGCGTTTCGGCGGCGCCTGGAGGAGGGCACCGCCGGAGGA
TCATCGCGGGCAAGCAGCGACGGCGGCGGTAGGGGCAGGCGGATGGCGGA
GGCGCCGGGGCCTGGAACAGGCAAGCGCCGGGATGCGGAGGCTGGCGGTA
TGTCGCCGCCGTGGCAGGGGGACTCGTCTAACCGGCAAATCCGCAAGATC
TGCAAGTACCTGTGGCTGCCCGTCAACGGGCTGGGCAGGACCCGCTACGG
CCCCTTCAGCCTCGGCAATGTCCGGGCCGGCGGGGTAGCCGGCGTGGAAA
TCCGGAAGGCGTTTCGGCGGCGCCTGGAGGAGGGCACCGCCGGAGGATCA
TCGCGGGCAAGCAGCGACGGCGGCGGTAGGGGCAGGCGGATGGCGGAGGC
GCCGGGGCCTGGAACAGGCAAGCGCCGGGATGCGGAGGCTGGCGGTATGT
CGCCGCCGTGGCAGGGGGACTCGTCT
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