mRNA_L-elsbetiae_contig19930.5975.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19930.5975.1
Unique NamemRNA_L-elsbetiae_contig19930.5975.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Match: A0A6H5JYY6_9PHAE (SQHop_cyclase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.180e-26
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    1 MLQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQQV 156
            MLQCDDGHWGGDY GPMFLMPG+I+AF+VTGTPLGE RRAGMEAYLRNHQQ 
Sbjct:  171 MLQCDDGHWGGDYAGPMFLMPGLIVAFYVTGTPLGEERRAGMEAYLRNHQQA 222          
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Match: D8LFF9_ECTSI (Cycloartenol synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF9_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.660e-26
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    1 MLQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQQV 156
            MLQCDDGHWGGDY GPMFLMPG+I+AF+VTGTPLGE RRAGMEAYLRNHQQ 
Sbjct:  171 MLQCDDGHWGGDYAGPMFLMPGLIVAFYVTGTPLGEERRAGMEAYLRNHQQA 222          
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Match: A0A4D9D0X3_9STRA (AGC-kinase C-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0X3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.780e-19
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 MLQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQQ 153
            MLQC+DGHW GDYGGPMFLMPG+I A ++TG PLGE+R   M AYL NHQQ
Sbjct:  183 MLQCEDGHWAGDYGGPMFLMPGLIFACYITGVPLGEARTTAMRAYLLNHQQ 233          
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Match: A0A835ZEP3_9STRA (Terpene cyclase/mutase family member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.910e-17
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 MLQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQQ 153
            M+QC+DGHWGGDYGGP+FLMPGMIIA +V G P+  +R A M  YL NHQQ
Sbjct:  212 MVQCEDGHWGGDYGGPLFLMPGMIIAHYVIGEPIAGARAAAMRHYLLNHQQ 262          
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Match: A0A482SSA2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSA2_9ARCH)

HSP 1 Score: 83.2 bits (204), Expect = 2.600e-17
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 MLQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQQV 156
            MLQ +DGHW GDYGGPMFLMPG+I   H+T TP    RR GM AYL+NHQQ+
Sbjct:   94 MLQSEDGHWAGDYGGPMFLMPGLICVLHITKTPYPPGRREGMIAYLKNHQQL 145          
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Match: A0A6S9IZA0_HETAK (Terpene cyclase/mutase family member (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IZA0_HETAK)

HSP 1 Score: 80.1 bits (196), Expect = 3.150e-16
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 MLQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQQV 156
            MLQ +DGHW GDYGGPMFL+PG++IA H+TG  L   +R  M  YLRNHQQ 
Sbjct:  220 MLQTEDGHWAGDYGGPMFLLPGLVIAHHITGAKLAAYKREAMVDYLRNHQQT 271          
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Match: A0A6U4XWX2_HEMAN (Terpene cyclase/mutase family member n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4XWX2_HEMAN)

HSP 1 Score: 79.7 bits (195), Expect = 4.310e-16
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 MLQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQQV 156
            MLQCDDGH+ GDYGGPMFLMPG+IIA +VTG  LG +R+  M  YLRNHQQ 
Sbjct:  211 MLQCDDGHFAGDYGGPMFLMPGLIIACYVTGFDLG-ARKQAMIVYLRNHQQA 261          
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Match: A0A7S0VGU1_9CRYP (Terpene cyclase/mutase family member (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VGU1_9CRYP)

HSP 1 Score: 79.0 bits (193), Expect = 8.030e-16
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 MLQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQQV 156
            MLQCDDGH+ GDYGGPMFLMPG+II  H+TG  LG  R+  M  YLRNHQQ 
Sbjct:  205 MLQCDDGHFAGDYGGPMFLMPGLIIVCHITGFDLGP-RKDAMITYLRNHQQA 255          
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Match: A0A2V3IV80_9FLOR (Terpene cyclase/mutase family member n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV80_9FLOR)

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-15
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    4 LQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQ 150
            LQC DGHW GDYGGPMFLMPGMIIA +VT TP   S++  M  YLRNHQ
Sbjct:  105 LQCGDGHWAGDYGGPMFLMPGMIIACYVTKTPFHASQKQEMIRYLRNHQ 153          
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Match: A0A0G4EMH6_VITBC (Terpene cyclase/mutase family member n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EMH6_VITBC)

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-15
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    4 LQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQQV 156
            LQCDDGH+ GDYGGP FL+PG++IA ++TG  LGE  + G+  YLRNHQQ+
Sbjct:  145 LQCDDGHFAGDYGGPHFLIPGLVIACYITGHDLGEHVKRGLCVYLRNHQQI 195          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19930.5975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYY6_9PHAE2.180e-2688.46SQHop_cyclase_N domain-containing protein n=1 Tax=... [more]
D8LFF9_ECTSI3.660e-2688.46Cycloartenol synthase n=1 Tax=Ectocarpus siliculos... [more]
A0A4D9D0X3_9STRA1.780e-1972.55AGC-kinase C-terminal domain-containing protein n=... [more]
A0A835ZEP3_9STRA1.910e-1768.63Terpene cyclase/mutase family member n=1 Tax=Tribo... [more]
A0A482SSA2_9ARCH2.600e-1767.31Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6S9IZA0_HETAK3.150e-1663.46Terpene cyclase/mutase family member (Fragment) n=... [more]
A0A6U4XWX2_HEMAN4.310e-1671.15Terpene cyclase/mutase family member n=2 Tax=Hemis... [more]
A0A7S0VGU1_9CRYP8.030e-1669.23Terpene cyclase/mutase family member (Fragment) n=... [more]
A0A2V3IV80_9FLOR1.100e-1571.43Terpene cyclase/mutase family member n=1 Tax=Graci... [more]
A0A0G4EMH6_VITBC2.800e-1562.75Terpene cyclase/mutase family member n=1 Tax=Vitre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19930contigL-elsbetiae_contig19930:1973..2134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue5.4e-22
Seed eggNOG ortholog2880.D8LFF9
KEGG rclassRC00874,RC01582,RC01850,RC01851
KEGG koko:K01852,ko:K01853,ko:K06045
KEGG ReactionR03199,R03200,R07322,R07323
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
KEGG ModuleM00101
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.oxidosqualene cyclase activity
EggNOG OGsCOG1657@1,KOG0497@2759
EC4.2.1.129,5.4.99.17,5.4.99.7,5.4.99.8
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size162
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.4039264-CDS-L-elsbetiae_contig19930:1972..21341622815824.4039264-CDS-L-elsbetiae_contig19930:1972..2134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19930 1973..2134 +
1691683126.9045737-CDS-L-elsbetiae_contig19930:1972..21341691683126.9045737-CDS-L-elsbetiae_contig19930:1972..2134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19930 1973..2134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19930.5975.1prot_L-elsbetiae_contig19930.5975.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19930 1973..2134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19930.5975.1

>prot_L-elsbetiae_contig19930.5975.1 ID=prot_L-elsbetiae_contig19930.5975.1|Name=mRNA_L-elsbetiae_contig19930.5975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
MLQCDDGHWGGDYGGPMFLMPGMIIAFHVTGTPLGESRRAGMEAYLRNHQ
QVC*
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mRNA from alignment at L-elsbetiae_contig19930:1973..2134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19930.5975.1 ID=mRNA_L-elsbetiae_contig19930.5975.1|Name=mRNA_L-elsbetiae_contig19930.5975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=162bp|location=Sequence derived from alignment at L-elsbetiae_contig19930:1973..2134+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCAGTGCGATGACGGTCACTGGGGCGGCGATTACGGGGGGCCCAT GTTCTTGATGCCCGGCATGATCATTGCCTTCCACGTCACGGGCACCCCCC TGGGAGAGTCGAGGAGGGCTGGCATGGAGGCGTACCTGAGGAACCACCAG CAGGTTTGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19930:1973..2134+

>mRNA_L-elsbetiae_contig19930.5975.1 ID=mRNA_L-elsbetiae_contig19930.5975.1|Name=mRNA_L-elsbetiae_contig19930.5975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig19930:1973..2134+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCAGTGCGATGACGGTCACTGGGGCGGCGATTACGGGGGGCCCAT
GTTCTTGATGCCCGGCATGATCATTGCCTTCCACGTCACGGGCACCCCCC
TGGGAGAGTCGAGGAGGGCTGGCATGGAGGCGTACCTGAGGAACCACCAG
CAGGTTTGTTGAATGCTCCAGTGCGATGACGGTCACTGGGGCGGCGATTA
CGGGGGGCCCATGTTCTTGATGCCCGGCATGATCATTGCCTTCCACGTCA
CGGGCACCCCCCTGGGAGAGTCGAGGAGGGCTGGCATGGAGGCGTACCTG
AGGAACCACCAGCAGGTTTGTTGA
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