mRNA_L-elsbetiae_contig19873.5948.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19873.5948.1
Unique NamemRNA_L-elsbetiae_contig19873.5948.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.990e-40
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 MSRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234
            MSRMVEDLFS D DLL+ CPNGRHAVGQNNEKFVPN QHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKR+L
Sbjct: 6288 MSRMVEDLFSQDFDLLVPCPNGRHAVGQNNEKFVPNSQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRML 6365          
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: I2CQF0_NANGC (Hect e3 ubiquitin (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQF0_NANGC)

HSP 1 Score: 100 bits (250), Expect = 3.580e-26
Identity = 49/80 (61.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 MSRMVEDLFSPD-LDLLMQCPNGRHAVGQNNEKFVPNPQHSS-PLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234
            MSR++EDL+SP+ L LL+ CPN +H +  N +KF+PNPQ ++ PLAL M  FVG+LMG+SLR  LCLPF  P LIWKRLL
Sbjct:    1 MSRVLEDLYSPETLYLLIPCPNAQHGLPTNTDKFLPNPQLATCPLALEMFEFVGKLMGMSLRANLCLPFHFPSLIWKRLL 80          
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A482SX25_9ARCH (HECT domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SX25_9ARCH)

HSP 1 Score: 107 bits (268), Expect = 1.800e-25
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    4 SRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234
            SR+VEDLFS   +LL+ CPNG+ AV    +K+VPNP+HS PLAL M  FVGRLMG+S+R +LCLPF  P LIWK++L
Sbjct:  300 SRIVEDLFSDHFNLLLLCPNGQQAVHSGMDKYVPNPKHSGPLALEMFEFVGRLMGMSIRAKLCLPFDFPPLIWKKIL 376          
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A7S2BNW0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BNW0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.080e-25
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 MSRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234
            M+ MV DL SP+  L++ CPNG H + +N +K++PNP HSSPLA+ ML FVG+LMG+SLRT+  LPF LPGL+WK ++
Sbjct:  109 MTEMVTDLHSPEFSLMILCPNGVHKINKNMDKYLPNPAHSSPLAIQMLEFVGKLMGVSLRTKATLPFSLPGLVWKGII 186          
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A7S1G912_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G912_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.950e-25
Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    4 SRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234
            +RMVEDLFSP   LL+ CPNGR++VG NNEK++P+   +SP A+ M  FVGRLMG+S+R ++CLPF  P L+W++L+
Sbjct:   10 NRMVEDLFSPHFGLLVLCPNGRNSVGLNNEKYLPDSSRTSPRAMQMFEFVGRLMGMSMRHKMCLPFDFPSLVWRQLV 86          
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A7S3UVM0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVM0_HETAK)

HSP 1 Score: 103 bits (256), Expect = 5.650e-24
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    4 SRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234
            + MVEDL SPD  L + CPNG+H V  N +K+VP+P H SPLA+ ML FVG+LMG+SLRT+  LPF LP  +WK +L
Sbjct:  173 TEMVEDLHSPDFGLFVLCPNGQHQVAVNTDKYVPSPAHESPLAMQMLEFVGKLMGISLRTKATLPFSLPAFVWKGVL 249          
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: W7TSE1_9STRA (Hect e3 ubiquitin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSE1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.620e-23
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 MSRMVEDLFSPD-LDLLMQCPNGRHAVGQNNEKFVPNPQHSS-PLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234
            MSR++EDL+SP+ L+LL+ CPN +H +  N +KF+PNPQ ++ PLAL M  FVG+LMG+SLR  LCLPF  P LIWKRLL
Sbjct: 1288 MSRVLEDLYSPETLNLLIPCPNAQHGLPTNTDKFLPNPQLATCPLALEMFEFVGKLMGMSLRANLCLPFHFPSLIWKRLL 1367          
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A836C961_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C961_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.630e-22
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    4 SRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234
            +R+ +DLFSP   L   CPN RHA G N EK+VP+   +S LAL  L FVGRLMG+SLRTRL LPF+LP L+WKRL+
Sbjct:  118 TRVTDDLFSPRFALFAPCPNARHATGLNGEKYVPS---ASALALQQLAFVGRLMGISLRTRLALPFELPSLVWKRLI 191          
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A7S2WTG5_9STRA (Hypothetical protein (Fragment) n=3 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTG5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.120e-21
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 MSRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWK 225
            M+ +V DL S D  L + CPNG H +  N +K++PNP+ SSPLA+ ML FVG+LMG+SLRT+  LPF  P ++WK
Sbjct:  943 MTEIVTDLHSQDFSLFILCPNGVHKINNNMDKYIPNPRSSSPLAIQMLEFVGKLMGVSLRTKATLPFNFPSIVWK 1017          
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A7S3M4G4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4G4_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.320e-20
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 MSRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQH-SSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234
            MSR+VEDLFS   DLL+ CPN +  V  N +K++PNPQH  S L   M  F+G+LM +S+RT+L LPF+ P ++WK+L+
Sbjct:   94 MSRIVEDLFSEHFDLLLLCPNAQQQVHSNMDKYIPNPQHIGSKLVREMFEFIGKLMAVSVRTKLYLPFEFPPIVWKKLV 172          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVC4_ECTSI2.990e-4092.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
I2CQF0_NANGC3.580e-2661.25Hect e3 ubiquitin (Fragment) n=1 Tax=Nannochlorops... [more]
A0A482SX25_9ARCH1.800e-2562.34HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2BNW0_9STRA3.080e-2557.69Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1G912_9STRA3.950e-2557.14Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3UVM0_HETAK5.650e-2458.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TSE1_9STRA1.620e-2361.25Hect e3 ubiquitin n=1 Tax=Nannochloropsis gaditana... [more]
A0A836C961_9STRA3.630e-2261.04HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2WTG5_9STRA8.120e-2153.33Hypothetical protein (Fragment) n=3 Tax=Rhizochrom... [more]
A0A7S3M4G4_9STRA1.320e-2051.90Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19873contigL-elsbetiae_contig19873:1116..1864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue4.3e-34
Seed eggNOG ortholog2880.D7FVC4
Preferred nameHERC1
KEGG koko:K10594,ko:K12864
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsCOG5184@1,KOG1426@2759,KOG1477@1,KOG1477@2759
EC2.3.2.26
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
Exons2
Model size252
Cds size252
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.2250724-CDS-L-elsbetiae_contig19873:1115..12831622815822.2250724-CDS-L-elsbetiae_contig19873:1115..1283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19873 1116..1283 -
1691683125.3834705-CDS-L-elsbetiae_contig19873:1115..12831691683125.3834705-CDS-L-elsbetiae_contig19873:1115..1283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19873 1116..1283 -
1622815822.2376778-CDS-L-elsbetiae_contig19873:1780..18641622815822.2376778-CDS-L-elsbetiae_contig19873:1780..1864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19873 1781..1864 -
1691683125.3939974-CDS-L-elsbetiae_contig19873:1780..18641691683125.3939974-CDS-L-elsbetiae_contig19873:1780..1864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19873 1781..1864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19873.5948.1prot_L-elsbetiae_contig19873.5948.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19873 1116..1864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19873.5948.1

>prot_L-elsbetiae_contig19873.5948.1 ID=prot_L-elsbetiae_contig19873.5948.1|Name=mRNA_L-elsbetiae_contig19873.5948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MSRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRF
VGRLMGLSLRTRLCLPFQLPGLIWKRLLVRRGY*
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mRNA from alignment at L-elsbetiae_contig19873:1116..1864-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19873.5948.1 ID=mRNA_L-elsbetiae_contig19873.5948.1|Name=mRNA_L-elsbetiae_contig19873.5948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=749bp|location=Sequence derived from alignment at L-elsbetiae_contig19873:1116..1864- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCGCATGGTGGAAGACCTTTTCTCGCCAGATTTGGACCTCCTGAT GCAGTGCCCCAACGGACGTCACGCCGTCGGCCAGGTGTGTATCTGACAGA TCTCTGCCTGCTTGGCGTACCTATTTTGTAGTTCTTGAGAGCAAGTCCTT ACTCAATATGGTGTCGTTGCAGACTGTTCAGCCCAACACCCCACAAGGCA CTTTTTTTTTACAAGTTGCGAGGGCGCGCTATTTTAAGTTGTTCCGTACA TTGCAGCGTCTGGGTTGTTCCTTGGCTTGGCAATGCTGGAAGGCCTGGAT TCTATTGCTCTTGGGGGTTATTGCACTTGAAAGTCTAGCTCCTTGGAACA CATGTGTGCCAGAGATCTGGGCGTGACTTGGTGGGTTTGGTTTTCAACAG CATTGAATCCTTAGTACCAATGGTGCCTCTACGTGGGCTGGAAGGTTACA TCCTGTGAGGATTCGGACTCATCTTTCTGCTTGTATTGAGCTCGCGTGAA CCCTTCCTGTTTACCGTTCTGTGTGTCGTCCGTCTGTTGCCTTCTCCTGC CCCCTCTGCTCTTGTTTATTTTGTTGTACAGAACAACGAGAAGTTCGTGC CCAACCCTCAGCACTCGTCTCCTTTGGCCCTCTCCATGCTGCGCTTCGTT GGCCGTCTGATGGGCTTGAGCCTCCGGACCCGTCTGTGCCTGCCGTTCCA ACTGCCCGGCTTGATTTGGAAGCGCCTTCTGGTACGTCGTGGATATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19873:1116..1864-

>mRNA_L-elsbetiae_contig19873.5948.1 ID=mRNA_L-elsbetiae_contig19873.5948.1|Name=mRNA_L-elsbetiae_contig19873.5948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig19873:1116..1864- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCGCATGGTGGAAGACCTTTTCTCGCCAGATTTGGACCTCCTGAT
GCAGTGCCCCAACGGACGTCACGCCGTCGGCCAGATGTCTCGCATGGTGG
AAGACCTTTTCTCGCCAGATTTGGACCTCCTGATGCAGTGCCCCAACGGA
CGTCACGCCGTCGGCCAGAACAACGAGAAGTTCGTGCCCAACCCTCAGCA
CTCGTCTCCTTTGGCCCTCTCCATGCTGCGCTTCGTTGGCCGTCTGATGG
GCTTGAGCCTCCGGACCCGTCTGTGCCTGCCGTTCCAACTGCCCGGCTTG
ATTTGGAAGCGCCTTCTGGTACGTCGTGGATATTGAAACAACGAGAAGTT
CGTGCCCAACCCTCAGCACTCGTCTCCTTTGGCCCTCTCCATGCTGCGCT
TCGTTGGCCGTCTGATGGGCTTGAGCCTCCGGACCCGTCTGTGCCTGCCG
TTCCAACTGCCCGGCTTGATTTGGAAGCGCCTTCTGGTACGTCGTGGATA
TTGA
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