mRNA_L-elsbetiae_contig19873.5948.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI) HSP 1 Score: 150 bits (378), Expect = 2.990e-40 Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1 Query: 1 MSRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234 MSRMVEDLFS D DLL+ CPNGRHAVGQNNEKFVPN QHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKR+L Sbjct: 6288 MSRMVEDLFSQDFDLLVPCPNGRHAVGQNNEKFVPNSQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRML 6365
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: I2CQF0_NANGC (Hect e3 ubiquitin (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQF0_NANGC) HSP 1 Score: 100 bits (250), Expect = 3.580e-26 Identity = 49/80 (61.25%), Postives = 62/80 (77.50%), Query Frame = 1 Query: 1 MSRMVEDLFSPD-LDLLMQCPNGRHAVGQNNEKFVPNPQHSS-PLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234 MSR++EDL+SP+ L LL+ CPN +H + N +KF+PNPQ ++ PLAL M FVG+LMG+SLR LCLPF P LIWKRLL Sbjct: 1 MSRVLEDLYSPETLYLLIPCPNAQHGLPTNTDKFLPNPQLATCPLALEMFEFVGKLMGMSLRANLCLPFHFPSLIWKRLL 80
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A482SX25_9ARCH (HECT domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SX25_9ARCH) HSP 1 Score: 107 bits (268), Expect = 1.800e-25 Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1 Query: 4 SRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234 SR+VEDLFS +LL+ CPNG+ AV +K+VPNP+HS PLAL M FVGRLMG+S+R +LCLPF P LIWK++L Sbjct: 300 SRIVEDLFSDHFNLLLLCPNGQQAVHSGMDKYVPNPKHSGPLALEMFEFVGRLMGMSIRAKLCLPFDFPPLIWKKIL 376
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A7S2BNW0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BNW0_9STRA) HSP 1 Score: 105 bits (263), Expect = 3.080e-25 Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 1 MSRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234 M+ MV DL SP+ L++ CPNG H + +N +K++PNP HSSPLA+ ML FVG+LMG+SLRT+ LPF LPGL+WK ++ Sbjct: 109 MTEMVTDLHSPEFSLMILCPNGVHKINKNMDKYLPNPAHSSPLAIQMLEFVGKLMGVSLRTKATLPFSLPGLVWKGII 186
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A7S1G912_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G912_9STRA) HSP 1 Score: 104 bits (259), Expect = 3.950e-25 Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 1 Query: 4 SRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234 +RMVEDLFSP LL+ CPNGR++VG NNEK++P+ +SP A+ M FVGRLMG+S+R ++CLPF P L+W++L+ Sbjct: 10 NRMVEDLFSPHFGLLVLCPNGRNSVGLNNEKYLPDSSRTSPRAMQMFEFVGRLMGMSMRHKMCLPFDFPSLVWRQLV 86
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A7S3UVM0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVM0_HETAK) HSP 1 Score: 103 bits (256), Expect = 5.650e-24 Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1 Query: 4 SRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234 + MVEDL SPD L + CPNG+H V N +K+VP+P H SPLA+ ML FVG+LMG+SLRT+ LPF LP +WK +L Sbjct: 173 TEMVEDLHSPDFGLFVLCPNGQHQVAVNTDKYVPSPAHESPLAMQMLEFVGKLMGISLRTKATLPFSLPAFVWKGVL 249
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: W7TSE1_9STRA (Hect e3 ubiquitin n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSE1_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.620e-23 Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 1 Query: 1 MSRMVEDLFSPD-LDLLMQCPNGRHAVGQNNEKFVPNPQHSS-PLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234 MSR++EDL+SP+ L+LL+ CPN +H + N +KF+PNPQ ++ PLAL M FVG+LMG+SLR LCLPF P LIWKRLL Sbjct: 1288 MSRVLEDLYSPETLNLLIPCPNAQHGLPTNTDKFLPNPQLATCPLALEMFEFVGKLMGMSLRANLCLPFHFPSLIWKRLL 1367
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A836C961_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C961_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 3.630e-22 Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1 Query: 4 SRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234 +R+ +DLFSP L CPN RHA G N EK+VP+ +S LAL L FVGRLMG+SLRTRL LPF+LP L+WKRL+ Sbjct: 118 TRVTDDLFSPRFALFAPCPNARHATGLNGEKYVPS---ASALALQQLAFVGRLMGISLRTRLALPFELPSLVWKRLI 191
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A7S2WTG5_9STRA (Hypothetical protein (Fragment) n=3 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTG5_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 8.120e-21 Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1 Query: 1 MSRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWK 225 M+ +V DL S D L + CPNG H + N +K++PNP+ SSPLA+ ML FVG+LMG+SLRT+ LPF P ++WK Sbjct: 943 MTEIVTDLHSQDFSLFILCPNGVHKINNNMDKYIPNPRSSSPLAIQMLEFVGKLMGVSLRTKATLPFNFPSIVWK 1017
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Match: A0A7S3M4G4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4G4_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.320e-20 Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1 Query: 1 MSRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQH-SSPLALSMLRFVGRLMGLSLRTRLCLPFQLPGLIWKRLL 234 MSR+VEDLFS DLL+ CPN + V N +K++PNPQH S L M F+G+LM +S+RT+L LPF+ P ++WK+L+ Sbjct: 94 MSRIVEDLFSEHFDLLLLCPNAQQQVHSNMDKYIPNPQHIGSKLVREMFEFIGKLMAVSVRTKLYLPFEFPPIVWKKLV 172 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19873.5948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19873.5948.1 >prot_L-elsbetiae_contig19873.5948.1 ID=prot_L-elsbetiae_contig19873.5948.1|Name=mRNA_L-elsbetiae_contig19873.5948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp MSRMVEDLFSPDLDLLMQCPNGRHAVGQNNEKFVPNPQHSSPLALSMLRFback to top mRNA from alignment at L-elsbetiae_contig19873:1116..1864- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig19873.5948.1 ID=mRNA_L-elsbetiae_contig19873.5948.1|Name=mRNA_L-elsbetiae_contig19873.5948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=749bp|location=Sequence derived from alignment at L-elsbetiae_contig19873:1116..1864- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19873:1116..1864- >mRNA_L-elsbetiae_contig19873.5948.1 ID=mRNA_L-elsbetiae_contig19873.5948.1|Name=mRNA_L-elsbetiae_contig19873.5948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig19873:1116..1864- (Laminarionema elsbetiae ELsaHSoW15)back to top |