prot_L-elsbetiae_contig19870.5947.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig19870.5947.1
Unique Name	prot_L-elsbetiae_contig19870.5947.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	91

Homology

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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: D8LH81_ECTSI (RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH81_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 8.420e-39
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0

Query:    1 LQGTVLDGHALELKRSTKKLTPSAKAS--YSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 91
            LQGTVLDGHALELKRSTK+LTP+ KAS      SQGD  K++K+IIRNIPFQATAKE+REL SSFGQLKRVRLPKKFDGGHRGFAFVDFLT+Q
Sbjct:  715 LQGTVLDGHALELKRSTKRLTPATKASSXXXXXSQGDSLKRTKIIIRNIPFQATAKEIRELCSSFGQLKRVRLPKKFDGGHRGFAFVDFLTAQ 807

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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: A0A835ZB66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB66_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.950e-29
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 0

Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 91
            LQGT+LDGHALELK STK+L P  K        G   K+SKLI RN+ FQATA+ELRELF ++GQL+RVR+PKKFDG HRGFAF+DF T+Q
Sbjct:  174 LQGTILDGHALELKHSTKRLAPVPKQ-IGVGVGGK--KRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQ 261

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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: A0A5D6YES3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YES3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.940e-28
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 0

Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDA-KKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 91
            LQ TVLDGHAL LK S KKL P+AK    +   G  A ++SK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  952 LQATVLDGHALNLKTSQKKLAPAAKRKADSDGAGVGAGRQSKIIVRNVAFEATSHEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQ 1043

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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: K3WZ46_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ46_GLOUD)

HSP 1 Score: 113 bits (282), Expect = 3.500e-27
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 0

Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAK----KSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 91
            LQ TVLDGHAL LK S KK+T + K     +   DDAK    KSK+I+RN+ F+AT+ E+RELF++FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  675 LQSTVLDGHALNLKISQKKMTQAPKRK---AGDDDDAKMSGRKSKIIVRNVAFEATSNEIRELFAAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQ 766

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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: A0A662XGG3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XGG3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.660e-26
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 0

Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 91
            LQ TV+DGHAL+L  S KKLT + K      +     +KSK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  680 LQSTVVDGHALKLILSQKKLTEAPKRKAGDGNAEASGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQ 770

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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: A0A421GSU1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GSU1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.020e-25
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 0

Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 91
            LQ TV+DGHAL LK S KK T + K          + +KSK+I+RN+ F+AT  ++RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  961 LQSTVVDGHALNLKLSQKKATAAPKRK--AGEDDGEGRKSKIIVRNVAFEATGNDIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQ 1049

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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: D0NJ71_PHYIT (RNA-binding protein, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0NJ71_PHYIT)

HSP 1 Score: 107 bits (268), Expect = 2.710e-25
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 0

Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 91
            LQ TV+DGHAL LK S KK + + K +        + +KSK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  604 LQNTVVDGHALNLKLSQKKASTAPKRA--AGEVDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQ 692

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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: G4Z1M6_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1M6_PHYSP)

HSP 1 Score: 107 bits (268), Expect = 2.710e-25
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 0

Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 91
            LQ TV+DGHAL LK S KK + + K +        + +KSK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  614 LQNTVVDGHALNLKLSQKKASAAPKRAVGE--VDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQ 702

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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: A0A8J5JGZ2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JGZ2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.750e-25
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 0

Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGD---DAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 91
            LQ TV+DGHAL LK S KK + + K +      GD   + +KSK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  973 LQSTVVDGHALNLKLSQKKASAAPKRAA-----GDVDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQ 1061

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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: H3GG11_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG11_PHYRM)

HSP 1 Score: 107 bits (267), Expect = 3.760e-25
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 0

Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGD-DAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 91
            LQ T++DGHAL LK S KK + + K +   +  G+ + +KSK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct: 1006 LQSTIVDGHALNLKLSQKKASAAPKRA---AGDGEGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQ 1094

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LH81_ECTSI	8.420e-39	81.72	RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 ...	[more]
A0A835ZB66_9STRA	4.950e-29	65.93	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A5D6YES3_9STRA	2.940e-28	64.13	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
K3WZ46_GLOUD	3.500e-27	63.16	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A662XGG3_9STRA	1.660e-26	60.44	Uncharacterized protein n=2 Tax=Nothophytophthora ...	[more]
A0A421GSU1_9STRA	2.020e-25	59.34	Uncharacterized protein n=4 Tax=Phytophthora kerno...	[more]
D0NJ71_PHYIT	2.710e-25	59.34	RNA-binding protein, putative n=11 Tax=Phytophthor...	[more]
G4Z1M6_PHYSP	2.710e-25	59.34	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
A0A8J5JGZ2_9STRA	2.750e-25	59.57	Uncharacterized protein n=1 Tax=Phytophthora aleat...	[more]
H3GG11_PHYRM	3.760e-25	58.70	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..91 e-value: 1.2E-17 score: 66.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 42..89 e-value: 8.9E-13 score: 47.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 40..91 score: 13.788
None	No IPR available	PANTHER	PTHR23147:SF48	RNA-BINDING PROTEIN 19-RELATED	coord: 1..91
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..91
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..89

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig19870	contig	L-elsbetiae_contig19870:1320..2141 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig19870.5947.1	mRNA_L-elsbetiae_contig19870.5947.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig19870 1320..2141 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig19870.5947.1 ID=prot_L-elsbetiae_contig19870.5947.1|Name=mRNA_L-elsbetiae_contig19870.5947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQ
ATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR035979	RBD_domain_sf