mRNA_L-elsbetiae_contig19870.5947.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19870.5947.1
Unique NamemRNA_L-elsbetiae_contig19870.5947.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: D8LH81_ECTSI (RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH81_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 8.420e-39
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 LQGTVLDGHALELKRSTKKLTPSAKAS--YSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 273
            LQGTVLDGHALELKRSTK+LTP+ KAS      SQGD  K++K+IIRNIPFQATAKE+REL SSFGQLKRVRLPKKFDGGHRGFAFVDFLT+Q
Sbjct:  715 LQGTVLDGHALELKRSTKRLTPATKASSXXXXXSQGDSLKRTKIIIRNIPFQATAKEIRELCSSFGQLKRVRLPKKFDGGHRGFAFVDFLTAQ 807
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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: A0A835ZB66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB66_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.950e-29
Identity = 60/91 (65.93%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 273
            LQGT+LDGHALELK STK+L P  K        G   K+SKLI RN+ FQATA+ELRELF ++GQL+RVR+PKKFDG HRGFAF+DF T+Q
Sbjct:  174 LQGTILDGHALELKHSTKRLAPVPKQ-IGVGVGGK--KRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQ 261
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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: A0A5D6YES3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YES3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.940e-28
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDA-KKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 273
            LQ TVLDGHAL LK S KKL P+AK    +   G  A ++SK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  952 LQATVLDGHALNLKTSQKKLAPAAKRKADSDGAGVGAGRQSKIIVRNVAFEATSHEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQ 1043
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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: K3WZ46_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ46_GLOUD)

HSP 1 Score: 113 bits (282), Expect = 3.500e-27
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAK----KSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 273
            LQ TVLDGHAL LK S KK+T + K     +   DDAK    KSK+I+RN+ F+AT+ E+RELF++FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  675 LQSTVLDGHALNLKISQKKMTQAPKRK---AGDDDDAKMSGRKSKIIVRNVAFEATSNEIRELFAAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQ 766
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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: A0A662XGG3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XGG3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.660e-26
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 273
            LQ TV+DGHAL+L  S KKLT + K      +     +KSK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  680 LQSTVVDGHALKLILSQKKLTEAPKRKAGDGNAEASGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQ 770
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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: A0A421GSU1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GSU1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.020e-25
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 273
            LQ TV+DGHAL LK S KK T + K          + +KSK+I+RN+ F+AT  ++RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  961 LQSTVVDGHALNLKLSQKKATAAPKRK--AGEDDGEGRKSKIIVRNVAFEATGNDIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQ 1049
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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: D0NJ71_PHYIT (RNA-binding protein, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0NJ71_PHYIT)

HSP 1 Score: 107 bits (268), Expect = 2.710e-25
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 273
            LQ TV+DGHAL LK S KK + + K +        + +KSK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  604 LQNTVVDGHALNLKLSQKKASTAPKRA--AGEVDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQ 692
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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: G4Z1M6_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1M6_PHYSP)

HSP 1 Score: 107 bits (268), Expect = 2.710e-25
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 273
            LQ TV+DGHAL LK S KK + + K +        + +KSK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  614 LQNTVVDGHALNLKLSQKKASAAPKRAVGE--VDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQ 702
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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: A0A8J5JGZ2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JGZ2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.750e-25
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGD---DAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 273
            LQ TV+DGHAL LK S KK + + K +      GD   + +KSK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct:  973 LQSTVVDGHALNLKLSQKKASAAPKRAA-----GDVDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQ 1061
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BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Match: H3GG11_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG11_PHYRM)

HSP 1 Score: 107 bits (267), Expect = 3.760e-25
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGD-DAKKSKLIIRNIPFQATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ 273
            LQ T++DGHAL LK S KK + + K +   +  G+ + +KSK+I+RN+ F+AT+ E+RELF +FGQLKRVR+PKKFDG HRGFAFV+FLT Q
Sbjct: 1006 LQSTIVDGHALNLKLSQKKASAAPKRA---AGDGEGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQ 1094
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19870.5947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH81_ECTSI8.420e-3981.72RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835ZB66_9STRA4.950e-2965.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6YES3_9STRA2.940e-2864.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WZ46_GLOUD3.500e-2763.16Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662XGG3_9STRA1.660e-2660.44Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A421GSU1_9STRA2.020e-2559.34Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
D0NJ71_PHYIT2.710e-2559.34RNA-binding protein, putative n=11 Tax=Phytophthor... [more]
G4Z1M6_PHYSP2.710e-2559.34Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A8J5JGZ2_9STRA2.750e-2559.57Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
H3GG11_PHYRM3.760e-2558.70Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19870contigL-elsbetiae_contig19870:1320..2141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue3e-33
Seed eggNOG ortholog2880.D8LH81
Preferred nameRBM19
KEGG koko:K14787
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0009791,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018996,GO:0019843,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034462,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034660,GO:0040002,GO:0040008,GO:0040009,GO:0040010,GO:0040019,GO:0040025,GO:0042134,GO:0042254,GO:0042255,GO:0042274,GO:0042303,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045137,GO:0045927,GO:0045995,GO:0046483,GO:0048513,GO:0048518,GO:0048569,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904,GO:2000026
EggNOG free text desc.small-subunit processome assembly
EggNOG OGsKOG0110@1,KOG0110@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-24_000920.1
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.1815436-CDS-L-elsbetiae_contig19870:1319..14691622815822.1815436-CDS-L-elsbetiae_contig19870:1319..1469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19870 1320..1469 +
1691683125.3631382-CDS-L-elsbetiae_contig19870:1319..14691691683125.3631382-CDS-L-elsbetiae_contig19870:1319..1469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19870 1320..1469 +
1622815822.1920333-CDS-L-elsbetiae_contig19870:2018..21411622815822.1920333-CDS-L-elsbetiae_contig19870:2018..2141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19870 2019..2141 +
1691683125.374392-CDS-L-elsbetiae_contig19870:2018..21411691683125.374392-CDS-L-elsbetiae_contig19870:2018..2141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19870 2019..2141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19870.5947.1prot_L-elsbetiae_contig19870.5947.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19870 1320..2141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19870.5947.1

>prot_L-elsbetiae_contig19870.5947.1 ID=prot_L-elsbetiae_contig19870.5947.1|Name=mRNA_L-elsbetiae_contig19870.5947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
LQGTVLDGHALELKRSTKKLTPSAKASYSTSSQGDDAKKSKLIIRNIPFQ
ATAKELRELFSSFGQLKRVRLPKKFDGGHRGFAFVDFLTSQ
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mRNA from alignment at L-elsbetiae_contig19870:1320..2141+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19870.5947.1 ID=mRNA_L-elsbetiae_contig19870.5947.1|Name=mRNA_L-elsbetiae_contig19870.5947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig19870:1320..2141+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCAAGGCACAGTCCTGGACGGGCATGCCCTGGAGCTAAAGCGCTCCAC
AAAGAAACTCACACCGAGCGCGAAGGCGTCTTATTCTACCTCTTCACAGG
GCGACGACGCTAAGAAGTCCAAGCTCATCATCCGGAACATCCCTTTCCAG
GTAGGCAAAAGCACCTCCAGCATACCGTGCTCGTTTTCTCCCATCGAGTT
GGAAGCTCCTATGGTGGGCCGTGCACCGATGCCCCTTCTCGGCATCAAAT
CAAGTGTACCTGAACCTCCCCGTCGTGGTTGTCATCTGTCTGTCGGACAA
AGATGATGTGTGCGAACGTGGTTGTTCATTGACAGTATTACCTGGTGCAC
ACATGATTTGAGCACTCTGTTGTTGCCGAGGTGATGTGTGTGTCTCTTCG
ACCGGGTATGACTCTCGTATCAGTCCAAGTGGCAACGAGTACAACTCGTG
CTAGCCCGCATGGGGTTTTCGTGTGGCCACTACTGCTGTGGGACCTGTGC
TTGCTGGACCTGTTGTGTAGGGGACCGTTCTTGGTGCTTTGGAAAGGGTG
GAAACATACAGAAGAGTTGAAAATGTAACCGTCTTCTTCGGTGCGAAGTT
TGGAAAATGTGTCTACCCAGTGCGCCCTGATCGGCGTCCGTTTCGCCATC
AAGGGTTTTGACTTCGAGTAATCTTGTGTTTCTCTGCGCTTTGTTTCAGG
CGACTGCAAAGGAGCTTCGCGAGCTGTTTTCCAGTTTCGGCCAGCTGAAA
CGGGTGCGATTGCCGAAGAAGTTCGACGGCGGCCACCGGGGTTTCGCATT
CGTCGATTTCTTGACGTCACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19870:1320..2141+

>mRNA_L-elsbetiae_contig19870.5947.1 ID=mRNA_L-elsbetiae_contig19870.5947.1|Name=mRNA_L-elsbetiae_contig19870.5947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig19870:1320..2141+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCAAGGCACAGTCCTGGACGGGCATGCCCTGGAGCTAAAGCGCTCCAC
AAAGAAACTCACACCGAGCGCGAAGGCGTCTTATTCTACCTCTTCACAGG
GCGACGACGCTAAGAAGTCCAAGCTCATCATCCGGAACATCCCTTTCCAG
CTCCAAGGCACAGTCCTGGACGGGCATGCCCTGGAGCTAAAGCGCTCCAC
AAAGAAACTCACACCGAGCGCGAAGGCGTCTTATTCTACCTCTTCACAGG
GCGACGACGCTAAGAAGTCCAAGCTCATCATCCGGAACATCCCTTTCCAG
GCGACTGCAAAGGAGCTTCGCGAGCTGTTTTCCAGTTTCGGCCAGCTGAA
ACGGGTGCGATTGCCGAAGAAGTTCGACGGCGGCCACCGGGGTTTCGCAT
TCGTCGATTTCTTGACGTCACAGGCGACTGCAAAGGAGCTTCGCGAGCTG
TTTTCCAGTTTCGGCCAGCTGAAACGGGTGCGATTGCCGAAGAAGTTCGA
CGGCGGCCACCGGGGTTTCGCATTCGTCGATTTCTTGACGTCACAG
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