Homology
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Match:
A0A8J5FX94_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FX94_ZINOF)
HSP 1 Score: 50.1 bits (118), Expect = 3.060e-5
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 1
Query: 4 CARVKGRRASVPKKGGRATSPCSTLHLDLCGGLYP-SIAGSIYLLAVVDNFSRLLLTYGLRRKSDA 198
C K R PK RA SP +H+D+CG + S+ Y + VD+F+R++ TY L RKSDA
Sbjct: 486 CIYRKMHRFPFPKTAWRARSPLELVHVDICGPIRSASLGNKQYFILFVDDFTRMIWTYFLDRKSDA 551
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Match:
A0A4Y2K047_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2K047_ARAVE)
HSP 1 Score: 49.7 bits (117), Expect = 3.680e-5
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 1 PCARVKGRRASVPKKGG-RATSPCSTLHLDLCGGLYP-SIAGSIYLLAVVDNFSRLLLTYGLRRKS 192
PC K +R S G R+T+P LHLD+CG L SI G Y L+++D++SR + T+ ++RK+
Sbjct: 105 PCRLAKSKRHSFKPIGKIRSTNPLELLHLDVCGPLPSNSIQGHRYFLSIIDDYSRKVTTFPMKRKT 170
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Match:
A0A8J5I781_ZINOF (Integrase catalytic domain-containing protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5I781_ZINOF)
HSP 1 Score: 49.3 bits (116), Expect = 5.740e-5
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 1
Query: 4 CARVKGRRASVPKKGGRATSPCSTLHLDLCGGLYP-SIAGSIYLLAVVDNFSRLLLTYGLRRKSDA 198
C K R PK RA SP +H D+CG + S+ Y + VD+F+R++ TY L RKSDA
Sbjct: 513 CIYGKMHRFPFPKTAWRARSPLELVHADICGPIRSASLGNKQYFILFVDDFTRMIWTYFLDRKSDA 578
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 3.06e-5 / Id = 40.91 Expect = 3.68e-5 / Id = 40.91 Expect = 5.74e-5 / Id = 40.91 Sequence A0A8J5FX94_ZINOF A0A4Y2K047_ARAVE A0A8J5I781_ZINOF
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description hypothetical protein
Ec32 ortholog Ec-08_005880.2
Exons 1
Model size 229
Cds size 228
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815821.7478752-CDS-L-elsbetiae_contig19859:2410..2638 1622815821.7478752-CDS-L-elsbetiae_contig19859:2410..2638 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig19859 2411..2638 +
1691683125.090838-CDS-L-elsbetiae_contig19859:2410..2638 1691683125.090838-CDS-L-elsbetiae_contig19859:2410..2638 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig19859 2411..2638 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19859.5941.1
>prot_L-elsbetiae_contig19859.5941.1 ID=prot_L-elsbetiae_contig19859.5941.1|Name=mRNA_L-elsbetiae_contig19859.5941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
PCARVKGRRASVPKKGGRATSPCSTLHLDLCGGLYPSIAGSIYLLAVVDN FSRLLLTYGLRRKSDATEGVQLALTD back to top mRNA from alignment at L-elsbetiae_contig19859:2411..2638+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19859.5941.1 ID=mRNA_L-elsbetiae_contig19859.5941.1|Name=mRNA_L-elsbetiae_contig19859.5941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig19859:2411..2638+ (Laminarionema elsbetiae ELsaHSoW15)CCGTGCGCACGTGTGAAGGGGAGGAGGGCCAGTGTGCCGAAAAAGGGAGG
ACGGGCGACGTCGCCGTGCAGCACCCTCCACCTTGACCTGTGCGGCGGCC
TCTACCCGTCCATCGCCGGCAGCATCTACCTCCTCGCGGTGGTGGACAAC
TTTTCCCGGCTCCTGCTCACCTACGGGCTGCGGCGCAAGTCAGACGCCAC
CGAGGGCGTGCAGCTCGCCCTCACCGAC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19859:2411..2638+
>mRNA_L-elsbetiae_contig19859.5941.1 ID=mRNA_L-elsbetiae_contig19859.5941.1|Name=mRNA_L-elsbetiae_contig19859.5941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig19859:2411..2638+ (Laminarionema elsbetiae ELsaHSoW15) CCGTGCGCACGTGTGAAGGGGAGGAGGGCCAGTGTGCCGAAAAAGGGAGG ACGGGCGACGTCGCCGTGCAGCACCCTCCACCTTGACCTGTGCGGCGGCC TCTACCCGTCCATCGCCGGCAGCATCTACCTCCTCGCGGTGGTGGACAAC TTTTCCCGGCTCCTGCTCACCTACGGGCTGCGGCGCAAGTCAGACGCCAC CGAGGGCGTGCAGCTCGCCCTCACCGACCCGTGCGCACGTGTGAAGGGGA GGAGGGCCAGTGTGCCGAAAAAGGGAGGACGGGCGACGTCGCCGTGCAGC ACCCTCCACCTTGACCTGTGCGGCGGCCTCTACCCGTCCATCGCCGGCAG CATCTACCTCCTCGCGGTGGTGGACAACTTTTCCCGGCTCCTGCTCACCT ACGGGCTGCGGCGCAAGTCAGACGCCACCGAGGGCGTGCAGCTCGCCCTC ACCGAC back to top