mRNA_L-elsbetiae_contig19859.5941.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19859.5941.1
Unique NamemRNA_L-elsbetiae_contig19859.5941.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Match: A0A8J5FX94_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FX94_ZINOF)

HSP 1 Score: 50.1 bits (118), Expect = 3.060e-5
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 1 
Query:    4 CARVKGRRASVPKKGGRATSPCSTLHLDLCGGLYP-SIAGSIYLLAVVDNFSRLLLTYGLRRKSDA 198
            C   K  R   PK   RA SP   +H+D+CG +   S+    Y +  VD+F+R++ TY L RKSDA
Sbjct:  486 CIYRKMHRFPFPKTAWRARSPLELVHVDICGPIRSASLGNKQYFILFVDDFTRMIWTYFLDRKSDA 551
[Close]
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Match: A0A4Y2K047_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2K047_ARAVE)

HSP 1 Score: 49.7 bits (117), Expect = 3.680e-5
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 PCARVKGRRASVPKKGG-RATSPCSTLHLDLCGGLYP-SIAGSIYLLAVVDNFSRLLLTYGLRRKS 192
            PC   K +R S    G  R+T+P   LHLD+CG L   SI G  Y L+++D++SR + T+ ++RK+
Sbjct:  105 PCRLAKSKRHSFKPIGKIRSTNPLELLHLDVCGPLPSNSIQGHRYFLSIIDDYSRKVTTFPMKRKT 170
[Close]
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Match: A0A8J5I781_ZINOF (Integrase catalytic domain-containing protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5I781_ZINOF)

HSP 1 Score: 49.3 bits (116), Expect = 5.740e-5
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 1 
Query:    4 CARVKGRRASVPKKGGRATSPCSTLHLDLCGGLYP-SIAGSIYLLAVVDNFSRLLLTYGLRRKSDA 198
            C   K  R   PK   RA SP   +H D+CG +   S+    Y +  VD+F+R++ TY L RKSDA
Sbjct:  513 CIYGKMHRFPFPKTAWRARSPLELVHADICGPIRSASLGNKQYFILFVDDFTRMIWTYFLDRKSDA 578
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19859.5941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8J5FX94_ZINOF3.060e-540.91Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A4Y2K047_ARAVE3.680e-540.91Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5I781_ZINOF5.740e-540.91Integrase catalytic domain-containing protein n=3 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19859contigL-elsbetiae_contig19859:2411..2638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_005880.2
Exons1
Model size229
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815821.7478752-CDS-L-elsbetiae_contig19859:2410..26381622815821.7478752-CDS-L-elsbetiae_contig19859:2410..2638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19859 2411..2638 +
1691683125.090838-CDS-L-elsbetiae_contig19859:2410..26381691683125.090838-CDS-L-elsbetiae_contig19859:2410..2638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19859 2411..2638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19859.5941.1prot_L-elsbetiae_contig19859.5941.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19859 2411..2638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19859.5941.1

>prot_L-elsbetiae_contig19859.5941.1 ID=prot_L-elsbetiae_contig19859.5941.1|Name=mRNA_L-elsbetiae_contig19859.5941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
PCARVKGRRASVPKKGGRATSPCSTLHLDLCGGLYPSIAGSIYLLAVVDN
FSRLLLTYGLRRKSDATEGVQLALTD
back to top

mRNA from alignment at L-elsbetiae_contig19859:2411..2638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19859.5941.1 ID=mRNA_L-elsbetiae_contig19859.5941.1|Name=mRNA_L-elsbetiae_contig19859.5941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig19859:2411..2638+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTGCGCACGTGTGAAGGGGAGGAGGGCCAGTGTGCCGAAAAAGGGAGG
ACGGGCGACGTCGCCGTGCAGCACCCTCCACCTTGACCTGTGCGGCGGCC
TCTACCCGTCCATCGCCGGCAGCATCTACCTCCTCGCGGTGGTGGACAAC
TTTTCCCGGCTCCTGCTCACCTACGGGCTGCGGCGCAAGTCAGACGCCAC
CGAGGGCGTGCAGCTCGCCCTCACCGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig19859:2411..2638+

>mRNA_L-elsbetiae_contig19859.5941.1 ID=mRNA_L-elsbetiae_contig19859.5941.1|Name=mRNA_L-elsbetiae_contig19859.5941.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig19859:2411..2638+ (Laminarionema elsbetiae ELsaHSoW15)
CCGTGCGCACGTGTGAAGGGGAGGAGGGCCAGTGTGCCGAAAAAGGGAGG
ACGGGCGACGTCGCCGTGCAGCACCCTCCACCTTGACCTGTGCGGCGGCC
TCTACCCGTCCATCGCCGGCAGCATCTACCTCCTCGCGGTGGTGGACAAC
TTTTCCCGGCTCCTGCTCACCTACGGGCTGCGGCGCAAGTCAGACGCCAC
CGAGGGCGTGCAGCTCGCCCTCACCGACCCGTGCGCACGTGTGAAGGGGA
GGAGGGCCAGTGTGCCGAAAAAGGGAGGACGGGCGACGTCGCCGTGCAGC
ACCCTCCACCTTGACCTGTGCGGCGGCCTCTACCCGTCCATCGCCGGCAG
CATCTACCTCCTCGCGGTGGTGGACAACTTTTCCCGGCTCCTGCTCACCT
ACGGGCTGCGGCGCAAGTCAGACGCCACCGAGGGCGTGCAGCTCGCCCTC
ACCGAC
back to top