prot_L-elsbetiae_contig19684.5875.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig19684.5875.1
Unique Nameprot_L-elsbetiae_contig19684.5875.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length75
Homology
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A6H5JEL3_9PHAE (Pre-mRNA-processing factor 19 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEL3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.550e-34
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 0
Query:    2 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 74
            +SGQTPETPVVSKKSGH+YEKRLIVKYIDAEGKCPATG ELTADDLL+++SE AVKPRP EAASIPGLL+ +Q
Sbjct:    5 ISGQTPETPVVSKKSGHIYEKRLIVKYIDAEGKCPATGEELTADDLLDVRSEGAVKPRPAEAASIPGLLSFLQ 77          
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A835YI40_9STRA (Pre-mRNA-processing factor 19 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI40_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.410e-25
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    2 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 74
            +SG+ PE PVVS+K+GH++E+RLI KYIDAEGKCP TG  L  DDL++++S K V+PRP  A SIPGLLA+MQ
Sbjct:    5 ISGEVPEVPVVSRKTGHLFERRLIEKYIDAEGKCPITGEPLGVDDLMDVKSNKVVRPRPATATSIPGLLALMQ 77          
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: UPI00051C4BE2 (pre-mRNA-processing factor 19 homolog 1-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051C4BE2)

HSP 1 Score: 97.4 bits (241), Expect = 1.440e-24
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 0
Query:    1 TVSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQV 75
            ++SG+ PE PVVSKKSG ++EKRLI ++I   GKCP TG  LTADD++ +++ K VKPRPV+AASIPG+L + Q+
Sbjct:    4 SISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPVTGEPLTADDIIPVKTGKIVKPRPVQAASIPGMLGMFQI 78          
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A4Y7L8Z3_PAPSO (Pre-mRNA-processing factor 19 n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7L8Z3_PAPSO)

HSP 1 Score: 100 bits (250), Expect = 3.110e-23
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 0
Query:    2 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQV 75
            +SG+ PE PVVSKK+GH++EKRL+ ++++  GKCP TG  LT DDL+ +++ KAVKPRP++AASIPGLL + Q+
Sbjct:    5 ISGEVPEEPVVSKKTGHLFEKRLVERHVEDFGKCPVTGEPLTMDDLMPVKTNKAVKPRPLQAASIPGLLGMFQI 78          
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A7S1C5N2_9STRA (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5N2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.400e-23
Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = 0
Query:    2 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 74
            +SG  PE PVVS+ +GH+YEKRLI K I A G+CP +  E+ ADDL+++++ K++KPRP  A S+PGLL+I+Q
Sbjct:   12 ISGTVPEEPVVSRTTGHLYEKRLITKAIAATGRCPVSNEEIDADDLVDVKAAKSIKPRPASATSVPGLLSILQ 84          
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A444FYR8_ENSVE (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444FYR8_ENSVE)

HSP 1 Score: 92.8 bits (229), Expect = 9.050e-23
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 0
Query:    2 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 74
            VSG+ PE PVVSKKSG ++E+RLI  +I + GKCP T  +LT DDL+ +++ K VKPRP++AASIPGLL + Q
Sbjct:   12 VSGEVPEEPVVSKKSGLLFERRLIEHHITSHGKCPVTKEDLTTDDLVLVKTNKVVKPRPLQAASIPGLLGMFQ 84          
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A2G9G914_9LAMI (Pre-mRNA-processing factor 19 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9G914_9LAMI)

HSP 1 Score: 92.8 bits (229), Expect = 1.070e-22
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 0
Query:    1 TVSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQV 75
            ++SG+ PE PVVSK SG ++EKRLI ++I   GKCP TG  LT DD++ +++ K VKPRPV+AASIPG+L + Q+
Sbjct:   47 SISGEVPEEPVVSKSSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPVKTGKIVKPRPVQAASIPGMLGMFQI 121          
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A6U8B0X1_9EUGL (Pre-mRNA-processing factor 19 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8B0X1_9EUGL)

HSP 1 Score: 99.4 bits (246), Expect = 1.080e-22
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0
Query:    2 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 74
            VSG +PE PVVS+K+GH++EKR+I KYI   GKCP T  ELT DDLL ++S K  KPRP +A+SIPGLL++ Q
Sbjct:   10 VSGISPEEPVVSRKTGHLFEKRIIEKYIQQHGKCPVTDQELTMDDLLSVESSKTPKPRPAQASSIPGLLSLFQ 82          
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A446ITD5_TRITD (Pre-mRNA-processing factor 19 n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446ITD5_TRITD)

HSP 1 Score: 91.7 bits (226), Expect = 2.380e-22
Identity = 40/73 (54.79%), Postives = 58/73 (79.45%), Query Frame = 0
Query:    2 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 74
            +SG+ P+ PVVSK+SG ++E+RLI +YI+  GKCP T  EL+ DD++ +++ K V+PRP++AASIPGLL I Q
Sbjct:    5 ISGEVPDEPVVSKRSGLLFERRLIERYIEDHGKCPVTKEELSMDDIVLVKTNKVVRPRPLQAASIPGLLGIFQ 77          
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A813HIU3_POLGL (Pre-mRNA-processing factor 19 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HIU3_POLGL)

HSP 1 Score: 98.2 bits (243), Expect = 2.650e-22
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 0
Query:    2 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 74
            +SG   E PV S K+GHVYEKRLIVK ID+ GKCP T  ELT DDL+++++ KAV+PRP  A SIPG+L+++Q
Sbjct:    8 ISGNAAEEPVFSPKTGHVYEKRLIVKQIDSTGKCPVTKEELTKDDLVDVKANKAVRPRPASATSIPGMLSLLQ 80          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEL3_9PHAE1.550e-3484.93Pre-mRNA-processing factor 19 n=2 Tax=Ectocarpus T... [more]
A0A835YI40_9STRA2.410e-2564.38Pre-mRNA-processing factor 19 n=1 Tax=Tribonema mi... [more]
UPI00051C4BE21.440e-2458.67pre-mRNA-processing factor 19 homolog 1-like n=1 T... [more]
A0A4Y7L8Z3_PAPSO3.110e-2358.11Pre-mRNA-processing factor 19 n=2 Tax=Papaver somn... [more]
A0A7S1C5N2_9STRA4.400e-2354.79Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=B... [more]
A0A444FYR8_ENSVE9.050e-2358.90Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=E... [more]
A0A2G9G914_9LAMI1.070e-2256.00Pre-mRNA-processing factor 19 n=1 Tax=Handroanthus... [more]
A0A6U8B0X1_9EUGL1.080e-2261.64Pre-mRNA-processing factor 19 n=1 Tax=Eutreptiella... [more]
A0A446ITD5_TRITD2.380e-2254.79Pre-mRNA-processing factor 19 n=2 Tax=Triticum tur... [more]
A0A813HIU3_POLGL2.650e-2260.27Pre-mRNA-processing factor 19 n=1 Tax=Polarella gl... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003613U box domainSMARTSM00504Ubox_2coord: 3..63
e-value: 6.6E-10
score: 48.9
IPR003613U box domainPROSITEPS51698U_BOXcoord: 1..67
score: 16.941
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..54
e-value: 5.6E-18
score: 66.2
IPR004181Zinc finger, MIZ-typePFAMPF11789zf-Nsecoord: 5..39
e-value: 1.3E-6
score: 28.1
IPR038959Pre-mRNA-processing factor 19PANTHERPTHR43995FAMILY NOT NAMEDcoord: 2..74
NoneNo IPR availablePANTHERPTHR43995:SF1PRE-MRNA-PROCESSING FACTOR 19coord: 2..74
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19684contigL-elsbetiae_contig19684:1395..2193 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19684.5875.1mRNA_L-elsbetiae_contig19684.5875.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig19684 1395..2193 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig19684.5875.1 ID=prot_L-elsbetiae_contig19684.5875.1|Name=mRNA_L-elsbetiae_contig19684.5875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
TVSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLEL
QSEKAVKPRPVEAASIPGLLAIMQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR013083Znf_RING/FYVE/PHD
IPR004181Znf_MIZ
IPR038959Prp19