mRNA_L-elsbetiae_contig19684.5875.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19684.5875.1
Unique NamemRNA_L-elsbetiae_contig19684.5875.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A6H5JEL3_9PHAE (Pre-mRNA-processing factor 19 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEL3_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.550e-34
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    4 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 222
            +SGQTPETPVVSKKSGH+YEKRLIVKYIDAEGKCPATG ELTADDLL+++SE AVKPRP EAASIPGLL+ +Q
Sbjct:    5 ISGQTPETPVVSKKSGHIYEKRLIVKYIDAEGKCPATGEELTADDLLDVRSEGAVKPRPAEAASIPGLLSFLQ 77
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BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A835YI40_9STRA (Pre-mRNA-processing factor 19 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI40_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.410e-25
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    4 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 222
            +SG+ PE PVVS+K+GH++E+RLI KYIDAEGKCP TG  L  DDL++++S K V+PRP  A SIPGLLA+MQ
Sbjct:    5 ISGEVPEVPVVSRKTGHLFERRLIEKYIDAEGKCPITGEPLGVDDLMDVKSNKVVRPRPATATSIPGLLALMQ 77
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BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: UPI00051C4BE2 (pre-mRNA-processing factor 19 homolog 1-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051C4BE2)

HSP 1 Score: 97.4 bits (241), Expect = 1.440e-24
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 TVSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQV 225
            ++SG+ PE PVVSKKSG ++EKRLI ++I   GKCP TG  LTADD++ +++ K VKPRPV+AASIPG+L + Q+
Sbjct:    4 SISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPVTGEPLTADDIIPVKTGKIVKPRPVQAASIPGMLGMFQI 78
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BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A4Y7L8Z3_PAPSO (Pre-mRNA-processing factor 19 n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7L8Z3_PAPSO)

HSP 1 Score: 100 bits (250), Expect = 3.110e-23
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    4 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQV 225
            +SG+ PE PVVSKK+GH++EKRL+ ++++  GKCP TG  LT DDL+ +++ KAVKPRP++AASIPGLL + Q+
Sbjct:    5 ISGEVPEEPVVSKKTGHLFEKRLVERHVEDFGKCPVTGEPLTMDDLMPVKTNKAVKPRPLQAASIPGLLGMFQI 78
[Close]
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A7S1C5N2_9STRA (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5N2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.400e-23
Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    4 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 222
            +SG  PE PVVS+ +GH+YEKRLI K I A G+CP +  E+ ADDL+++++ K++KPRP  A S+PGLL+I+Q
Sbjct:   12 ISGTVPEEPVVSRTTGHLYEKRLITKAIAATGRCPVSNEEIDADDLVDVKAAKSIKPRPASATSVPGLLSILQ 84
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BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A444FYR8_ENSVE (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444FYR8_ENSVE)

HSP 1 Score: 92.8 bits (229), Expect = 9.050e-23
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    4 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 222
            VSG+ PE PVVSKKSG ++E+RLI  +I + GKCP T  +LT DDL+ +++ K VKPRP++AASIPGLL + Q
Sbjct:   12 VSGEVPEEPVVSKKSGLLFERRLIEHHITSHGKCPVTKEDLTTDDLVLVKTNKVVKPRPLQAASIPGLLGMFQ 84
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BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A2G9G914_9LAMI (Pre-mRNA-processing factor 19 n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9G914_9LAMI)

HSP 1 Score: 92.8 bits (229), Expect = 1.070e-22
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 TVSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQV 225
            ++SG+ PE PVVSK SG ++EKRLI ++I   GKCP TG  LT DD++ +++ K VKPRPV+AASIPG+L + Q+
Sbjct:   47 SISGEVPEEPVVSKSSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPVKTGKIVKPRPVQAASIPGMLGMFQI 121
[Close]
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A6U8B0X1_9EUGL (Pre-mRNA-processing factor 19 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8B0X1_9EUGL)

HSP 1 Score: 99.4 bits (246), Expect = 1.080e-22
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    4 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 222
            VSG +PE PVVS+K+GH++EKR+I KYI   GKCP T  ELT DDLL ++S K  KPRP +A+SIPGLL++ Q
Sbjct:   10 VSGISPEEPVVSRKTGHLFEKRIIEKYIQQHGKCPVTDQELTMDDLLSVESSKTPKPRPAQASSIPGLLSLFQ 82
[Close]
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A446ITD5_TRITD (Pre-mRNA-processing factor 19 n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446ITD5_TRITD)

HSP 1 Score: 91.7 bits (226), Expect = 2.380e-22
Identity = 40/73 (54.79%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    4 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 222
            +SG+ P+ PVVSK+SG ++E+RLI +YI+  GKCP T  EL+ DD++ +++ K V+PRP++AASIPGLL I Q
Sbjct:    5 ISGEVPDEPVVSKRSGLLFERRLIERYIEDHGKCPVTKEELSMDDIVLVKTNKVVRPRPLQAASIPGLLGIFQ 77
[Close]
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Match: A0A813HIU3_POLGL (Pre-mRNA-processing factor 19 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HIU3_POLGL)

HSP 1 Score: 98.2 bits (243), Expect = 2.650e-22
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    4 VSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLELQSEKAVKPRPVEAASIPGLLAIMQ 222
            +SG   E PV S K+GHVYEKRLIVK ID+ GKCP T  ELT DDL+++++ KAV+PRP  A SIPG+L+++Q
Sbjct:    8 ISGNAAEEPVFSPKTGHVYEKRLIVKQIDSTGKCPVTKEELTKDDLVDVKANKAVRPRPASATSIPGMLSLLQ 80
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19684.5875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEL3_9PHAE1.550e-3484.93Pre-mRNA-processing factor 19 n=2 Tax=Ectocarpus T... [more]
A0A835YI40_9STRA2.410e-2564.38Pre-mRNA-processing factor 19 n=1 Tax=Tribonema mi... [more]
UPI00051C4BE21.440e-2458.67pre-mRNA-processing factor 19 homolog 1-like n=1 T... [more]
A0A4Y7L8Z3_PAPSO3.110e-2358.11Pre-mRNA-processing factor 19 n=2 Tax=Papaver somn... [more]
A0A7S1C5N2_9STRA4.400e-2354.79Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=B... [more]
A0A444FYR8_ENSVE9.050e-2358.90Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=E... [more]
A0A2G9G914_9LAMI1.070e-2256.00Pre-mRNA-processing factor 19 n=1 Tax=Handroanthus... [more]
A0A6U8B0X1_9EUGL1.080e-2261.64Pre-mRNA-processing factor 19 n=1 Tax=Eutreptiella... [more]
A0A446ITD5_TRITD2.380e-2254.79Pre-mRNA-processing factor 19 n=2 Tax=Triticum tur... [more]
A0A813HIU3_POLGL2.650e-2260.27Pre-mRNA-processing factor 19 n=1 Tax=Polarella gl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19684contigL-elsbetiae_contig19684:1395..2193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue4.5e-27
Seed eggNOG ortholog2880.D7G8G6
Preferred namePRPF19
KEGG koko:K10599,ko:K14808,ko:K20368
KEGG TC8.A.61
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000151,GO:0000209,GO:0000244,GO:0000245,GO:0000349,GO:0000375,GO:0000377,GO:0000381,GO:0000387,GO:0000393,GO:0000398,GO:0000726,GO:0000974,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0005811,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006302,GO:0006303,GO:0006325,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006629,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008380,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009792,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010498,GO:0010604,GO:0010628,GO:0010720,GO:0010721,GO:0014013,GO:0014015,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016604,GO:0016607,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022008,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030154,GO:0030163,GO:0030312,GO:0031323,GO:0031325,GO:0031461,GO:0031570,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033120,GO:0033554,GO:0034450,GO:0034613,GO:0034622,GO:0034641,GO:0035556,GO:0035861,GO:0036211,GO:0040007,GO:0042221,GO:0042742,GO:0042770,GO:0042802,GO:0043009,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045666,GO:0045685,GO:0045687,GO:0045786,GO:0045935,GO:0046483,GO:0046686,GO:0048024,GO:0048026,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048699,GO:0048710,GO:0048711,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050685,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051241,GO:0051252,GO:0051254,GO:0051276,GO:0051603,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051962,GO:0060255,GO:0060284,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0070013,GO:0070534,GO:0070647,GO:0070727,GO:0071006,GO:0071007,GO:0071012,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0072395,GO:0072401,GO:0072422,GO:0080008,GO:0080090,GO:0090304,GO:0090734,GO:0098542,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902494,GO:1903311,GO:1903313,GO:1990234,GO:1990904,GO:2000026
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG0289@1,KOG0289@2759
EC2.3.2.27,3.6.4.13
COG Functional cat.DK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03009,ko03041,ko03400,ko04121,ko04131
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815815.7226877-CDS-L-elsbetiae_contig19684:1394..14961622815815.7226877-CDS-L-elsbetiae_contig19684:1394..1496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19684 1395..1496 +
1691683120.98388-CDS-L-elsbetiae_contig19684:1394..14961691683120.98388-CDS-L-elsbetiae_contig19684:1394..1496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19684 1395..1496 +
1622815815.7329547-CDS-L-elsbetiae_contig19684:2070..21931622815815.7329547-CDS-L-elsbetiae_contig19684:2070..2193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19684 2071..2193 +
1691683120.9977634-CDS-L-elsbetiae_contig19684:2070..21931691683120.9977634-CDS-L-elsbetiae_contig19684:2070..2193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19684 2071..2193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19684.5875.1prot_L-elsbetiae_contig19684.5875.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19684 1395..2193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19684.5875.1

>prot_L-elsbetiae_contig19684.5875.1 ID=prot_L-elsbetiae_contig19684.5875.1|Name=mRNA_L-elsbetiae_contig19684.5875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
TVSGQTPETPVVSKKSGHVYEKRLIVKYIDAEGKCPATGGELTADDLLEL
QSEKAVKPRPVEAASIPGLLAIMQV
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mRNA from alignment at L-elsbetiae_contig19684:1395..2193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19684.5875.1 ID=mRNA_L-elsbetiae_contig19684.5875.1|Name=mRNA_L-elsbetiae_contig19684.5875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=799bp|location=Sequence derived from alignment at L-elsbetiae_contig19684:1395..2193+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGTCTCGGGACAGACGCCGGAGACGCCCGTGGTGTCGAAGAAGTCGGG
GCACGTGTACGAGAAGCGGTTGATCGTCAAGTACATCGATGCGGAGGGAA
AGGTGCGAGGCAGGGGGGGAGGGCGCAAAATCATAAGTCATATTCTACAC
CCGGTACTTTCACCTGGTAGGCCTTCCGTGGGTGGTTGACTTCTTTTGGG
GGGGGGGGGGGGGGGGGGAGAGTTGGGGCATGATATCAGGGGGTAGGGGG
AGTGCATTACTGCAGTCGTTCGCCCCCGGCAAGCCTGCATGGTTGAGTTC
ATCAACCACGTTGCTTGTTGTTGTTCCGTTCCACTAGCTTTACTAGCTAC
ATGGTGCGTAGAGCCTCTCCCCTTTTTCCTCGCTCGCTCCCAGATACTTT
TGTATCCCACCATGGGTAATTCATGGCGTAATCTTGATCTTTGCAGTACA
TCTGTACGTGGAATCCCTCTGCCGTCCGTCTTCTTTGTGGTACCGTGTTG
TTCGCACGATTGACATGGACGTGTGTGGATATCATTTCGTGTCGTGTCGC
GCAACGGAACGGGACGGAAATGGAAACGGAAACGGAAACGGAAACGGAAA
CGGAACGAAAACGCGTGGACGAAATCCGATCGTTCGCTTGTCAAAAACAA
ACGGCGATGGGTTATATGCTTCGCAGTGCCCCGCCACGGGCGGGGAGCTG
ACCGCGGACGACCTGCTGGAGCTGCAGTCGGAGAAGGCGGTCAAGCCCCG
CCCGGTCGAGGCTGCCTCCATCCCCGGCCTCCTGGCTATCATGCAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19684:1395..2193+

>mRNA_L-elsbetiae_contig19684.5875.1 ID=mRNA_L-elsbetiae_contig19684.5875.1|Name=mRNA_L-elsbetiae_contig19684.5875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig19684:1395..2193+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGTCTCGGGACAGACGCCGGAGACGCCCGTGGTGTCGAAGAAGTCGGG
GCACGTGTACGAGAAGCGGTTGATCGTCAAGTACATCGATGCGGAGGGAA
AGACAGTCTCGGGACAGACGCCGGAGACGCCCGTGGTGTCGAAGAAGTCG
GGGCACGTGTACGAGAAGCGGTTGATCGTCAAGTACATCGATGCGGAGGG
AAAGTGCCCCGCCACGGGCGGGGAGCTGACCGCGGACGACCTGCTGGAGC
TGCAGTCGGAGAAGGCGGTCAAGCCCCGCCCGGTCGAGGCTGCCTCCATC
CCCGGCCTCCTGGCTATCATGCAGGTGTGCCCCGCCACGGGCGGGGAGCT
GACCGCGGACGACCTGCTGGAGCTGCAGTCGGAGAAGGCGGTCAAGCCCC
GCCCGGTCGAGGCTGCCTCCATCCCCGGCCTCCTGGCTATCATGCAGGTG
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