mRNA_L-elsbetiae_contig19433.5770.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19433.5770.1
Unique NamemRNA_L-elsbetiae_contig19433.5770.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Match: D7G0B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 7.870e-20
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 135
            FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV
Sbjct:  105 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 149
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BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Match: A0A835ZGW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.930e-15
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 135
            F VRVLVRNLYSSTLDLLGTG T+ QGDL N  SIVDAVSGVDKV
Sbjct:  478 FKVRVLVRNLYSSTLDLLGTGVTYTQGDLGNAASIVDAVSGVDKV 522
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BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Match: A0A2V3J7E6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7E6_9FLOR)

HSP 1 Score: 62.8 bits (151), Expect = 2.670e-10
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 135
            ++VRVLVRNLYSSTLDLLGTG +F +G L +Y S+++A   VDKV
Sbjct:   82 YNVRVLVRNLYSSTLDLLGTGVSFVKGSLDDYDSLLEATGDVDKV 126
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BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Match: A0A7S2ZMD3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZMD3_9RHOD)

HSP 1 Score: 61.2 bits (147), Expect = 9.300e-10
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 135
            + VRVLVRNL++ TLDLLGTG ++  GD+T+  ++++AVSGVDKV
Sbjct:  108 YQVRVLVRNLFTETLDLLGTGCSYVMGDITDPYALMEAVSGVDKV 152
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BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Match: M2VV10_GALSU (Transcription repressor n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VV10_GALSU)

HSP 1 Score: 61.2 bits (147), Expect = 9.330e-10
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 135
            + VRVLVRNLYSSTLD +GTG TFA+GD+    S+ DA+  +DKV
Sbjct:  140 YRVRVLVRNLYSSTLDAVGTGCTFAKGDVRELSSLYDAMENIDKV 184
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BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Match: A0A7S3EC31_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC31_9RHOD)

HSP 1 Score: 61.2 bits (147), Expect = 9.330e-10
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 135
            + VRVLVRNL++ TLDLLGTG ++  GD+T+  ++++AVSGVDKV
Sbjct:  108 YQVRVLVRNLFTETLDLLGTGCSYVMGDITDPYALMEAVSGVDKV 152
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BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Match: A0A7S2UKF4_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKF4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-9
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 135
            F VRVLVR+LYS TL++LGTG T+ QGDL+N  S+  A++ VDK+
Sbjct:  294 FRVRVLVRDLYSKTLNMLGTGVTYCQGDLSNIESLEYAITDVDKI 338
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BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Match: A0A1X6PIK3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIK3_PORUM)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-9
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 135
            F VRVLVR+L++ TLD LGTG +F +GDL +  +++DAVSGVDK+
Sbjct:  149 FRVRVLVRDLFTKTLDTLGTGVSFVKGDLRDADTLLDAVSGVDKI 193
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BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Match: R7Q993_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q993_CHOCR)

HSP 1 Score: 59.3 bits (142), Expect = 4.450e-9
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 135
            ++VRVLVR+L+SSTLDLLGTG +F +G L +Y S+++A   VDKV
Sbjct:   34 YNVRVLVRDLFSSTLDLLGTGVSFVKGSLDDYDSLLEATGDVDKV 78
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BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Match: A0A448Z9F2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9F2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV 135
            F VRVLVR+LYS TL+LLGTG ++ QGDL+N  S+  A++ VDK+
Sbjct:  407 FRVRVLVRDLYSQTLNLLGTGVSYCQGDLSNVESLEYALTDVDKI 451
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19433.5770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0B1_ECTSI7.870e-20100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZGW1_9STRA8.930e-1584.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V3J7E6_9FLOR2.670e-1064.44Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S2ZMD3_9RHOD9.300e-1060.00Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
M2VV10_GALSU9.330e-1062.22Transcription repressor n=1 Tax=Galdieria sulphura... [more]
A0A7S3EC31_9RHOD9.330e-1060.00Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S2UKF4_9STRA3.260e-960.00Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A1X6PIK3_PORUM3.260e-960.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7Q993_CHOCR4.450e-960.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A448Z9F2_9STRA1.140e-860.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19433contigL-elsbetiae_contig19433:647..781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D7G0B1
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
EC2.3.1.48
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815806.4936047-CDS-L-elsbetiae_contig19433:646..7811622815806.4936047-CDS-L-elsbetiae_contig19433:646..781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19433 647..781 -
1691683114.8935797-CDS-L-elsbetiae_contig19433:646..7811691683114.8935797-CDS-L-elsbetiae_contig19433:646..781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19433 647..781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19433.5770.1prot_L-elsbetiae_contig19433.5770.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19433 647..781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19433.5770.1

>prot_L-elsbetiae_contig19433.5770.1 ID=prot_L-elsbetiae_contig19433.5770.1|Name=mRNA_L-elsbetiae_contig19433.5770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
FSVRVLVRNLYSSTLDLLGTGATFAQGDLTNYRSIVDAVSGVDKV
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mRNA from alignment at L-elsbetiae_contig19433:647..781-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19433.5770.1 ID=mRNA_L-elsbetiae_contig19433.5770.1|Name=mRNA_L-elsbetiae_contig19433.5770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=135bp|location=Sequence derived from alignment at L-elsbetiae_contig19433:647..781- (Laminarionema elsbetiae ELsaHSoW15)
TTTTCTGTGCGGGTGCTGGTGCGCAACCTGTACTCGAGCACGCTGGACCT
GCTGGGGACGGGCGCGACTTTCGCCCAGGGGGACCTCACGAACTACCGCA
GCATCGTCGACGCCGTGTCCGGGGTAGATAAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19433:647..781-

>mRNA_L-elsbetiae_contig19433.5770.1 ID=mRNA_L-elsbetiae_contig19433.5770.1|Name=mRNA_L-elsbetiae_contig19433.5770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig19433:647..781- (Laminarionema elsbetiae ELsaHSoW15)
TTTTCTGTGCGGGTGCTGGTGCGCAACCTGTACTCGAGCACGCTGGACCT
GCTGGGGACGGGCGCGACTTTCGCCCAGGGGGACCTCACGAACTACCGCA
GCATCGTCGACGCCGTGTCCGGGGTAGATAAGGTGTTTTCTGTGCGGGTG
CTGGTGCGCAACCTGTACTCGAGCACGCTGGACCTGCTGGGGACGGGCGC
GACTTTCGCCCAGGGGGACCTCACGAACTACCGCAGCATCGTCGACGCCG
TGTCCGGGGTAGATAAGGTG
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