Homology
BLAST of mRNA_L-elsbetiae_contig19167.5658.1 vs. uniprot
Match:
A0A6H5JRZ0_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ0_9PHAE)
HSP 1 Score: 73.6 bits (179), Expect = 3.230e-14
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 1 CVYWSETSNQWSVDGVALEGVSLELDGTSTITCRTFHLSPFAIADETSEAV 153
CVYWSE SN+W VDG+ L ++E+DGTS+ TC TFHLSPF IA+E S ++
Sbjct: 140 CVYWSEKSNEWEVDGIVLGHSTVEVDGTSSTTCWTFHLSPFGIAEEQSPSI 190
BLAST of mRNA_L-elsbetiae_contig19167.5658.1 vs. uniprot
Match:
D7G0E1_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E1_ECTSI)
HSP 1 Score: 68.6 bits (166), Expect = 3.180e-12
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1
Query: 1 CVYWSETSNQWSVDGVALEGVSLELDGTSTITCRTFHLSPFAIADETSEAV 153
C YWSE SN+W DG+ L + E+ G S+ITC TFHLSPFAIA E S +V
Sbjct: 215 CAYWSEVSNEWKSDGIVLGSSTNEVGGASSITCSTFHLSPFAIAQEQSASV 265
BLAST of mRNA_L-elsbetiae_contig19167.5658.1 vs. uniprot
Match:
D7G0E0_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E0_ECTSI)
HSP 1 Score: 67.4 bits (163), Expect = 8.200e-12
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 1 CVYWSETSNQWSVDGVALEGVSLELDGTSTITCRTFHLSPFAIADETSEAV 153
C YWSE SN+W DGV L ++++DGTS+I C TFHLSPFAI ++ S +
Sbjct: 181 CGYWSEVSNEWKADGVVLGSANVKVDGTSSIICWTFHLSPFAITEKQSTPI 231
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19167.5658.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 3.23e-14 / Id = 60.78 Expect = 3.18e-12 / Id = 58.82 Expect = 8.20e-12 / Id = 54.90 Sequence A0A6H5JRZ0_9PHAE D7G0E1_ECTSI D7G0E0_ECTSI
Match Name E-value Identity Description
A0A6H5JRZ0_9PHAE 3.230e-14 60.78 GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0E1_ECTSI 3.180e-12 58.82 GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0E0_ECTSI 8.200e-12 54.90 GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category no signal peptide or anchor
Exons 1
Model size 153
Cds size 153
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815796.0105817-CDS-L-elsbetiae_contig19167:1360..1513 1622815796.0105817-CDS-L-elsbetiae_contig19167:1360..1513 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig19167 1361..1513 +
1691683108.257489-CDS-L-elsbetiae_contig19167:1360..1513 1691683108.257489-CDS-L-elsbetiae_contig19167:1360..1513 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig19167 1361..1513 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig19167.5658.1
>prot_L-elsbetiae_contig19167.5658.1 ID=prot_L-elsbetiae_contig19167.5658.1|Name=mRNA_L-elsbetiae_contig19167.5658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=51bp
CVYWSETSNQWSVDGVALEGVSLELDGTSTITCRTFHLSPFAIADETSEA V back to top mRNA from alignment at L-elsbetiae_contig19167:1361..1513+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19167.5658.1 ID=mRNA_L-elsbetiae_contig19167.5658.1|Name=mRNA_L-elsbetiae_contig19167.5658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=153bp|location=Sequence derived from alignment at L-elsbetiae_contig19167:1361..1513+ (Laminarionema elsbetiae ELsaHSoW15)TGTGTTTATTGGTCCGAAACTAGCAACCAGTGGAGCGTTGATGGGGTCGC
ACTGGAGGGCGTTAGCCTTGAGCTCGACGGAACCTCCACAATCACCTGCC
GGACCTTTCACTTGAGCCCCTTTGCAATAGCAGATGAAACCAGCGAAGCG
GTT back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig19167:1361..1513+
>mRNA_L-elsbetiae_contig19167.5658.1 ID=mRNA_L-elsbetiae_contig19167.5658.1|Name=mRNA_L-elsbetiae_contig19167.5658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig19167:1361..1513+ (Laminarionema elsbetiae ELsaHSoW15) TGTGTTTATTGGTCCGAAACTAGCAACCAGTGGAGCGTTGATGGGGTCGC ACTGGAGGGCGTTAGCCTTGAGCTCGACGGAACCTCCACAATCACCTGCC GGACCTTTCACTTGAGCCCCTTTGCAATAGCAGATGAAACCAGCGAAGCG GTTTGTGTTTATTGGTCCGAAACTAGCAACCAGTGGAGCGTTGATGGGGT CGCACTGGAGGGCGTTAGCCTTGAGCTCGACGGAACCTCCACAATCACCT GCCGGACCTTTCACTTGAGCCCCTTTGCAATAGCAGATGAAACCAGCGAA GCGGTT back to top