mRNA_L-elsbetiae_contig19167.5658.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig19167.5658.1
Unique NamemRNA_L-elsbetiae_contig19167.5658.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig19167.5658.1 vs. uniprot
Match: A0A6H5JRZ0_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.230e-14
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 CVYWSETSNQWSVDGVALEGVSLELDGTSTITCRTFHLSPFAIADETSEAV 153
            CVYWSE SN+W VDG+ L   ++E+DGTS+ TC TFHLSPF IA+E S ++
Sbjct:  140 CVYWSEKSNEWEVDGIVLGHSTVEVDGTSSTTCWTFHLSPFGIAEEQSPSI 190
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BLAST of mRNA_L-elsbetiae_contig19167.5658.1 vs. uniprot
Match: D7G0E1_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E1_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.180e-12
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 CVYWSETSNQWSVDGVALEGVSLELDGTSTITCRTFHLSPFAIADETSEAV 153
            C YWSE SN+W  DG+ L   + E+ G S+ITC TFHLSPFAIA E S +V
Sbjct:  215 CAYWSEVSNEWKSDGIVLGSSTNEVGGASSITCSTFHLSPFAIAQEQSASV 265
[Close]
BLAST of mRNA_L-elsbetiae_contig19167.5658.1 vs. uniprot
Match: D7G0E0_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E0_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 8.200e-12
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 CVYWSETSNQWSVDGVALEGVSLELDGTSTITCRTFHLSPFAIADETSEAV 153
            C YWSE SN+W  DGV L   ++++DGTS+I C TFHLSPFAI ++ S  +
Sbjct:  181 CGYWSEVSNEWKADGVVLGSANVKVDGTSSIICWTFHLSPFAITEKQSTPI 231
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig19167.5658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRZ0_9PHAE3.230e-1460.78GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0E1_ECTSI3.180e-1258.82GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0E0_ECTSI8.200e-1254.90GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig19167contigL-elsbetiae_contig19167:1361..1513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815796.0105817-CDS-L-elsbetiae_contig19167:1360..15131622815796.0105817-CDS-L-elsbetiae_contig19167:1360..1513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19167 1361..1513 +
1691683108.257489-CDS-L-elsbetiae_contig19167:1360..15131691683108.257489-CDS-L-elsbetiae_contig19167:1360..1513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig19167 1361..1513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig19167.5658.1prot_L-elsbetiae_contig19167.5658.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig19167 1361..1513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig19167.5658.1

>prot_L-elsbetiae_contig19167.5658.1 ID=prot_L-elsbetiae_contig19167.5658.1|Name=mRNA_L-elsbetiae_contig19167.5658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=51bp
CVYWSETSNQWSVDGVALEGVSLELDGTSTITCRTFHLSPFAIADETSEA
V
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mRNA from alignment at L-elsbetiae_contig19167:1361..1513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig19167.5658.1 ID=mRNA_L-elsbetiae_contig19167.5658.1|Name=mRNA_L-elsbetiae_contig19167.5658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=153bp|location=Sequence derived from alignment at L-elsbetiae_contig19167:1361..1513+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGTTTATTGGTCCGAAACTAGCAACCAGTGGAGCGTTGATGGGGTCGC
ACTGGAGGGCGTTAGCCTTGAGCTCGACGGAACCTCCACAATCACCTGCC
GGACCTTTCACTTGAGCCCCTTTGCAATAGCAGATGAAACCAGCGAAGCG
GTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig19167:1361..1513+

>mRNA_L-elsbetiae_contig19167.5658.1 ID=mRNA_L-elsbetiae_contig19167.5658.1|Name=mRNA_L-elsbetiae_contig19167.5658.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig19167:1361..1513+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGTTTATTGGTCCGAAACTAGCAACCAGTGGAGCGTTGATGGGGTCGC
ACTGGAGGGCGTTAGCCTTGAGCTCGACGGAACCTCCACAATCACCTGCC
GGACCTTTCACTTGAGCCCCTTTGCAATAGCAGATGAAACCAGCGAAGCG
GTTTGTGTTTATTGGTCCGAAACTAGCAACCAGTGGAGCGTTGATGGGGT
CGCACTGGAGGGCGTTAGCCTTGAGCTCGACGGAACCTCCACAATCACCT
GCCGGACCTTTCACTTGAGCCCCTTTGCAATAGCAGATGAAACCAGCGAA
GCGGTT
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