mRNA_L-elsbetiae_contig1895.5565.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1895.5565.1
Unique NamemRNA_L-elsbetiae_contig1895.5565.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1895.5565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1895contigL-elsbetiae_contig1895:3274..3982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size280
Cds size171
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1895.5565.1prot_L-elsbetiae_contig1895.5565.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1895 3274..3873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.4877763-CDS-L-elsbetiae_contig1895:3273..33281622815787.4877763-CDS-L-elsbetiae_contig1895:3273..3328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 3274..3328 +
1691683102.586704-CDS-L-elsbetiae_contig1895:3273..33281691683102.586704-CDS-L-elsbetiae_contig1895:3273..3328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 3274..3328 +
1622815787.503471-CDS-L-elsbetiae_contig1895:3757..38731622815787.503471-CDS-L-elsbetiae_contig1895:3757..3873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 3758..3873 +
1691683102.5976043-CDS-L-elsbetiae_contig1895:3757..38731691683102.5976043-CDS-L-elsbetiae_contig1895:3757..3873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1895 3758..3873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.5143797-UTR-L-elsbetiae_contig1895:3873..39821622815787.5143797-UTR-L-elsbetiae_contig1895:3873..3982Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1895 3874..3982 +
1691683102.606067-UTR-L-elsbetiae_contig1895:3873..39821691683102.606067-UTR-L-elsbetiae_contig1895:3873..3982Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1895 3874..3982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1895.5565.1

>prot_L-elsbetiae_contig1895.5565.1 ID=prot_L-elsbetiae_contig1895.5565.1|Name=mRNA_L-elsbetiae_contig1895.5565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
REWVGTSASKQRKHCQRVGAERPCVTNCYHVELTFSCELIDLGEERATIF
CFRALG*
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mRNA from alignment at L-elsbetiae_contig1895:3274..3982+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1895.5565.1 ID=mRNA_L-elsbetiae_contig1895.5565.1|Name=mRNA_L-elsbetiae_contig1895.5565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=709bp|location=Sequence derived from alignment at L-elsbetiae_contig1895:3274..3982+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAATGGGTGGGCACGAGCGCCTCCAAACAGCGAAAGCACTGCCAGCG
TGTTGGTAAAAATGAGCGGTGTGCTTTTTTTTATGAGCGGGGTCGGCTGT
CGTGCATACGTTTTTTTCTTTCTGTTGTGGCACGATAGCCGTGGGTGTCT
TGTATATCCGCCGTGAATATCCAAGGCTGACGCTGCCTCTCTATCATGAC
TTGATTCGTCCGTGTCTCTTTGTCTACTGTGTTATCCTGGTTTTAGTGTT
CGTGTGTGTGTGTGTGTGTGTGTATGTGGTTTTCTGTTTGTGCCCTGGTG
TAGCCGAGCTCGAAGAGATCGCTTGTTTACTCCGCTGCCGCCCGTTCGTA
GAACGATCCCTCTCCCTGGTGGAAGTCCTGCTTACGGCGCTACTCACCCG
TAGATGCCGGCTCTTGGCAGTTGTACCTAACTGCATAAAACGAGCTCATC
CTACGCTGTGTTTCGCCCTTTCGTTTTTCAATAGGTGCAGAACGGCCGTG
CGTCACAAATTGTTATCATGTTGAACTCACGTTCAGTTGCGAGTTGATAG
ATTTGGGAGAGGAACGTGCGACCATTTTTTGTTTCCGTGCCCTCGGGTAA
CCGGCGGGGTGGGCGGTGGAGCTGGGGCGGCCGAGGTTCACTTCGCCCTT
TTCCAGCCGTAGGTCCAGAACCACCTGAAAAAGTTTGCCGTGTCGGCCGA
TTAGCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1895:3274..3982+

>mRNA_L-elsbetiae_contig1895.5565.1 ID=mRNA_L-elsbetiae_contig1895.5565.1|Name=mRNA_L-elsbetiae_contig1895.5565.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig1895:3274..3982+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGAATGGGTGGGCACGAGCGCCTCCAAACAGCGAAAGCACTGCCAGCG
TGTTGCGGGAATGGGTGGGCACGAGCGCCTCCAAACAGCGAAAGCACTGC
CAGCGTGTTGGTGCAGAACGGCCGTGCGTCACAAATTGTTATCATGTTGA
ACTCACGTTCAGTTGCGAGTTGATAGATTTGGGAGAGGAACGTGCGACCA
TTTTTTGTTTCCGTGCCCTCGGGTAAGTGCAGAACGGCCGTGCGTCACAA
ATTGTTATCATGTTGAACTCACGTTCAGTTGCGAGTTGATAGATTTGGGA
GAGGAACGTGCGACCATTTTTTGTTTCCGTGCCCTCGGGTAA
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