mRNA_L-elsbetiae_contig1881.5509.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1881.5509.1 vs. uniprot
Match: D8LFQ9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI) HSP 1 Score: 422 bits (1085), Expect = 3.560e-122 Identity = 495/1253 (39.51%), Postives = 561/1253 (44.77%), Query Frame = 1
Query: 166 PLEGLHKSGGCFVTPKKARPKRWWCGQCLLPI-SRPDFGGGVRVMGVSP--HEPVRIAPMVRRCASADARYDGDLDGRAAGSXXXXXXXXXGATPSFSGGRSHDXXXXXXXXXXXXXXXXXXXL------AAEVV-----YQRKGSRFVVGRSRERLSAAACMGXXXXRPGDGGFGAGRGLGAAAPRADGVAAEKGAEMATRLVSVGHDEWKEACTAEGKIYYYNRRTRVPRWTLPPTATYVPDPERPAGYRIFASATAAVSVN---KSTAXXXXXXXXXXXTSGKKAIRKVGVARGTIDKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAMQRFVVHKSGLWASSLRPTGPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPTAS-PEQSAEDARPPVPQIDPTG---AAATAVASACPAADGARPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAVSPGQEAAR--DGGAERGAA--GSVVVPSPAGATTFTTPAAGRRVRTEEGSREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLTDFVHTVRVESGGRCDPSAPFPGSRAAADR-----AGTSKYIENTGMEDEXXXXXXXXXXVVFSSWRSPGTLRRRPLGPVRRSDELGYPLPS-SRADTCCRSSSGGKKPGP------TAVETPKTALAGLPVNQGAGRSRFDSRLDERSAVAATAXXXXXEDGKTVRLAXXXXXXXXXXXLGGVRHSGLPGSSVLRHGVRRQLFSENSEAKPLVFCPFCGEGVISPGGLRGHLQVCYVLDRCRGSETHKQVEVAIKAISVEPPRKHS---THAVDAVFSLDNEESFEGSTVLQQAPPASLSQTATSGFGSTGNGPENVLV-------SEIPRV---GGGAGP---EASGAGLEFSLGEGEGA---VERCEGCGRTFAPGRLQSHAKACRSVFLERRRPYDPRAMRARGTPLEFFQQPIGASTPDGDPSNSGKKGDHGKKASPVARRGVGVGXXXXXXXXXXXXXXXXXXXXXXXXXXNHVSPG-FRGSVGAAK-PARGGGGGVAG----RTNWTAAK-LPVVEGSAHCPFCSRSVPRAKLSAHLLRCKRPRSAQSAPKPEV 3735
PLEGLHK GCFVTPKK G LL R MGVSP HEPVRIAPMVR S XXXXX T + + +D A VV Q + SRFVVGRS ER+SAA MG XX GVAA A L++V HDEWKEA TAEGKIYYYNRRTRVPRWTLPPTAT+VPDP RPAGYRIFA A A V++N KSTA TSG + + G ID XXXXXXXXXXXX SA + V +G T TAS E++ +D + P + PT + + + + P+A G XXXXXXXXXXXXXXXXG+AV G+ R + G E G+A V+ PA TT VR E E XXXXXXXXXXXXXXXXXXX +L DFVH VRV+SGGR D S P SR+ R AG + + +D+ FSS R PGT RRPLGPVRRS+E+ +PL S S S G ++P TA ETP TALAG+PV Q S RSA A T G V GG LPGSSVLRH VRRQLFSE+SEA+PLVFCPFCGEGV+ GGLR HLQ CYVLDRCRGSETHKQVEVAI+A+SVE S TH A SL+ + ST+LQ A P F S GNGPENVL SE+ V GGG G E SG GLE SLG G ERC CGRTFAPGRL+SHAKACRSVFLERRRPYDP+AMRARGTPLEFFQQPIGA++ DG+PS SG GD G A+ +RRGVG + VSPG SVG +RG GG V G R+ A K LP VEGSAHCPFCS S+PRAKLSAHLLRCK+ R +Q+ P+PE
Sbjct: 103 PLEGLHKMEGCFVTPKKIS------GHVLLGNRGXXXXXXXXRRMGVSPSDHEPVRIAPMVRHDRSDXXXXXXXXXXXXXXXXXXXXAATSMHTRTAAKQHENDRAYTLGFSTTETRPVDRGDRKTGSTGATAVVDDFPWKQTESSRFVVGRSSERMSAAESMGRGXXXXXXXXXXXXXXXXXXXXCLGGVAAA--GHDAAELLTVEHDEWKEARTAEGKIYYYNRRTRVPRWTLPPTATFVPDPNRPAGYRIFALA-ATVNINIGDKSTAPASA-------TSGSER-----TSGGVIDPL---------------LRGPGGAGAGGAREADSSRERFGRDNSGGGGAPLLIAPTLSEVTPMTTSDLESPAASSPTTXXXXXXXXXXXXASARVKNGVGTTGCGDGGAVTTPKRRESAPPAAARSPRDNGGTVETLTSTENAHTVSASPAPPTGYFSADETASLVEKTRDDDKHPERPVSPTAPRLSCSVGHSMSVPSAGGGA----------------------------------GIEGGAAPPXXXXXXXXXXXXXXXXGSAVGEGKTPRRQVEHGVEVGSACLTEVLPDEPAAVTTRAAXXXXXXVREGE-EFETEAQLTVDAPTTGGAGPVKTDRELEMEAAAAMATGQQGLSSQSGGAGQRXXXXXXXXXXXXXXXXXXXSSASLQDFVHYVRVQSGGRGDASLSSPASRSNRRRGGGQGAGAMRSGDAHMSKDKE----------AFSSERIPGTFHRRPLGPVRRSEEMEHPLSSRSSKPQEHHSHQGLEEPAADTALWATAAETPTTALAGVPVYQTHXXXXXXSSRSRRSAQADTVRY----SGSGVSGGKTGVCDAKGGSSGG--RGLLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRAGGLRDHLQECYVLDRCRGSETHKQVEVAIRAVSVEHQMHTSATNTHGKGA-SSLNGGSFQDSSTLLQHALPP---------FVSKGNGPENVLAPAVASENSELGGVVATGGGRGAAAGEVSGVGLEVSLGGGGAGGAEEERCGDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNPSTSGTGGDGGGTAA--SRRGVG-----RNNPSSVGGSSVRREGSSQSGGADCVSPGELDVSVGTGGGSSRGAGGEVGGSFLRRSKKVALKTLPAVEGSAHCPFCSTSIPRAKLSAHLLRCKKLRRSQTCPRPEA 1251
BLAST of mRNA_L-elsbetiae_contig1881.5509.1 vs. uniprot
Match: A0A6H5KQR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE) HSP 1 Score: 382 bits (981), Expect = 1.200e-114 Identity = 291/589 (49.41%), Postives = 331/589 (56.20%), Query Frame = 1
Query: 2476 GPTAVETPKTALAGLPVNQGAGRSRFDSRLDERSAVAATAXXXXXEDGKTVRLAXXXXXXXXXXXLGGVRHSGLPGSSVLRHGVRRQLFSENSEAKPLVFCPFCGEGVISPGGLRGHLQVCYVLDRCRGSETHKQVEVAIKAISVEPPRKHS---THAVDAVFSLDNEESFEGSTVLQQAPPASLSQTATSGFGSTGNGPENVLV-------SEIPRV------GGGAGPEASGAGLEFSLGEGEGA---VERCEGCGRTFAPGRLQSHAKACRSVFLERRRPYDPRAMRARGTPLEFFQQPIGASTPDGDPSNSGKKGDHGKKASPVARRGVGVGXXXXXXXXXXXXXXXXXXXXXXXXXXNHVSPG-FRGSVGAAK-PARGGGGGVAG----RTNWTAAK-LPVVEGSAHCPFCSRSVPRAKLSAHLLRCKRPRSAQSAPKPEVRRRRTYFGSSCVSSIISADETLDNDNSVLGXXXXXGIGN---HATRKVRCPHCDRGFSPSVAPTHISICARVENRPKSATTNPNIA-------------------------------HGAPQKDLGGTRRVQEEKARIMPPFY 4062
G +A ETP TALAG+P Q S RSA A T G V XXXXXXXXXX G LPGSSVLRH VRRQLFSE+SEA+PLVFCPFCGEGV+ GLR HLQ CYVLDRCRGSETHKQVEVAIKA+SVE S TH A S N+ SF+ S+ L Q A S F S GN PENVL SE+ RV G AG E SG E S G G ERCE CGRTFAPGRL+SHAKACRSVFLERRRPYDP+AMRARGTPLEFFQQPIGA++ D +P+ SGK GD G A+ +RRGVG + VSPG SVG +RG GG V G R+ A K LP VEG AHCPFCS S+PRAKLSAHLLRCK+ R +Q+ P+P+ G+ ++ + ++ + G XXXX +A+RKVRCPHC RGFSP+VAPTHISICARVENRPK + T A HG+ EKAR+MPPFY
Sbjct: 33 GASAAETPTTALAGVPGYQ--THHHHPSSRSRRSAQADTVRY----SGSGVGGGNXXXXXXXXXXSEG--RGLLPGSSVLRHRVRRQLFSEDSEARPLVFCPFCGEGVVRARGLRDHLQECYVLDRCRGSETHKQVEVAIKAVSVENQMHTSATNTHGRRA--SSLNDGSFQDSSTLLQH--------ALSPFVSKGNDPENVLAPAVASENSELGRVVATGGLRGTAGGEVSGVSSEVSSGGGGAGGAKFERCEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSD-NPTTSGKGGDGGGNAA--SRRGVG-----RNKPSSVGGSSVRREGSSESGDADRVSPGGLDVSVGTGGGSSRGVGGEVGGSFLRRSKKVALKTLPAVEGRAHCPFCSSSIPRAKLSAHLLRCKKLRRSQTCPRPKTGPSPRISGTDASNATVIHEDDKARTATYNGGXXXXXXXXXXXNASRKVRCPHCLRGFSPAVAPTHISICARVENRPKGSGTAKAAAARKDDAQKKVALGVGYTDASPPGGRKGLAASHGSSGAXXXXXXXXXPEKARVMPPFY 595
BLAST of mRNA_L-elsbetiae_contig1881.5509.1 vs. uniprot
Match: A0A835Z7V0_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V0_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.420e-16 Identity = 72/205 (35.12%), Postives = 87/205 (42.44%), Query Frame = 1
Query: 2707 SVLRHGVRRQLFSENSEAKPLVFCPFCGEGVISPGGLRGHLQVCYVLDRCRGSETHKQVEVAIKAISVEPPRKHSTHAVDAVFSLDNEESFEGSTVLQQAPPASLSQTATSGFGSTGNGPENVLVSEIPRVGGGAGPEASGAGLEFSLGEGEGAVERCEGCGRTFAPGRLQSHAKACRSVFLERRRPYDPRAMRARGTPLEFFQQ 3321
S +RHG RRQLFSE + A+P V+CP+CGE L HL C VL+R RG + VE A+ A A DA + AP R GGGA GE E+C CGRTFA GR+ +HA+ CR VF RR +D R R RGTPL F Q+
Sbjct: 683 SAVRHGPRRQLFSEGAPAQPSVYCPYCGERE-DAAALAAHLAACVVLERARGGPAQRSVEAALLA------------ARDAADAAXXXXXXXXXXXXXXAPRE-----------------------RFVRSGGGA-----------RSGE-----EQCADCGRTFAEGRIDAHARVCRRVFGARRPVFDGRERRLRGTPLAFMQR 835 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1881.5509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1881.5509.1 >prot_L-elsbetiae_contig1881.5509.1 ID=prot_L-elsbetiae_contig1881.5509.1|Name=mRNA_L-elsbetiae_contig1881.5509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1257bp MGVSPHEPVRIAPMVRRCASADARYDGDLDGRAAGSAESSGHASGGATPSback to top mRNA from alignment at L-elsbetiae_contig1881:2109..15337+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1881.5509.1 ID=mRNA_L-elsbetiae_contig1881.5509.1|Name=mRNA_L-elsbetiae_contig1881.5509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=13229bp|location=Sequence derived from alignment at L-elsbetiae_contig1881:2109..15337+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1881:2109..15337+ >mRNA_L-elsbetiae_contig1881.5509.1 ID=mRNA_L-elsbetiae_contig1881.5509.1|Name=mRNA_L-elsbetiae_contig1881.5509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7542bp|location=Sequence derived from alignment at L-elsbetiae_contig1881:2109..15337+ (Laminarionema elsbetiae ELsaHSoW15)back to top |