mRNA_L-elsbetiae_contig1856.5410.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1856.5410.1
Unique NamemRNA_L-elsbetiae_contig1856.5410.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1856.5410.1 vs. uniprot
Match: B5LWB2_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWB2_9PHYC)

HSP 1 Score: 93.6 bits (231), Expect = 1.480e-20
Identity = 82/206 (39.81%), Postives = 112/206 (54.37%), Query Frame = 1 
Query:    7 EGTTIMLAALSTVLILYVIQHERKSSRPFLSIVGLKKKKPVAT-------------LGAS--GCNNVSIDSPDFARCSTTLGSGRSVLRSRPRGDNIVSTFTKDNYAGEKLGNPFSVRSGPNLGSGEAFPFSSKSGDNKNNVRGQNFVSNIRQKTLNS--LGAAVSPSSTKLGASAKDIAQATNKLKDTNTVSSNSGGNLNLLHPL 573
            +G TI LA L+ VLIL V Q E K  RP      ++  K VAT             LG S   CN+V++DSPDFARC+TTLG+ R++  ++    N +    K + A   LG             GEAFPF+ KSG  +N+ RG+     +R        LGAAVSP+S      +++I  A+ KL++ N VSSN+GG+LNLL+PL
Sbjct:    4 DGPTITLAILAIVLILCVAQGEMKGPRP------VRVDKEVATSPAPSAELGGRRRLGGSRINCNDVALDSPDFARCATTLGTARTLRNTQKPALNYLQQEYKSDLA--PLGTT----------RGEAFPFTHKSGPIEND-RGR-LPDKVRHMIAGKDHLGAAVSPASM-----SREIEMASQKLENVNQVSSNTGGSLNLLNPL 184
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BLAST of mRNA_L-elsbetiae_contig1856.5410.1 vs. uniprot
Match: Q6XM21_9PHYC (FirrV-1-B15 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM21_9PHYC)

HSP 1 Score: 77.4 bits (189), Expect = 1.790e-14
Identity = 70/199 (35.18%), Postives = 101/199 (50.75%), Query Frame = 1 
Query:    7 EGTTIMLAALSTVLILYVI----QHERKS-------SRPFLSIVGLKKKKPVATLGASGCNNVSIDSPDFARCSTTLGSGRSVLRSRPRGDNIVSTFTKDNYAGEKLGNPFSVRSGPNLGSGEAFPFSSKSGDNKNNVRGQNFVSNIRQKTLNSLGAAVSPSSTKLGASAKDIAQATNKLKDTNTVSSNSGGNLNLLHP 570
            +  T++LA L  VL+++++    +H+R         S P  + +G +++   + L    C+NV++DSPDFARC+TTLG+     R  PR              GE    PF+ +SGP   +       S S  N+      N            LGAAVSPSS   GAS  ++  ATNKL+D N VS+ +GGNLNLL+P
Sbjct:    2 DAPTVVLAGLVIVLVVFMLTKNGKHKRDKKPPAPAPSAPTEAELGSRQRLGGSRLKGIDCDNVALDSPDFARCATTLGA----RRPNPR------------LKGEAF--PFTEKSGPLEANALQRKIQSVSAQNRQGGVPLNKAF---------LGAAVSPSSRSAGAS-NEMEMATNKLEDVNEVSTYAGGNLNLLNP 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1856.5410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWB2_9PHYC1.480e-2039.81Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM21_9PHYC1.790e-1435.18FirrV-1-B15 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1856contigL-elsbetiae_contig1856:12767..13420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionEsV-1-97
Ec32 orthologEc-06_005840.1
Exons2
Model size576
Cds size576
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.118352-CDS-L-elsbetiae_contig1856:12766..129671622815773.118352-CDS-L-elsbetiae_contig1856:12766..12967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 12767..12967 -
1691683092.7535322-CDS-L-elsbetiae_contig1856:12766..129671691683092.7535322-CDS-L-elsbetiae_contig1856:12766..12967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 12767..12967 -
1622815773.132995-CDS-L-elsbetiae_contig1856:13045..134201622815773.132995-CDS-L-elsbetiae_contig1856:13045..13420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 13046..13420 -
1691683092.763056-CDS-L-elsbetiae_contig1856:13045..134201691683092.763056-CDS-L-elsbetiae_contig1856:13045..13420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1856 13046..13420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1856.5410.1prot_L-elsbetiae_contig1856.5410.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1856 12767..13420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1856.5410.1

>prot_L-elsbetiae_contig1856.5410.1 ID=prot_L-elsbetiae_contig1856.5410.1|Name=mRNA_L-elsbetiae_contig1856.5410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=192bp
MSEGTTIMLAALSTVLILYVIQHERKSSRPFLSIVGLKKKKPVATLGASG
CNNVSIDSPDFARCSTTLGSGRSVLRSRPRGDNIVSTFTKDNYAGEKLGN
PFSVRSGPNLGSGEAFPFSSKSGDNKNNVRGQNFVSNIRQKTLNSLGAAV
SPSSTKLGASAKDIAQATNKLKDTNTVSSNSGGNLNLLHPL*
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mRNA from alignment at L-elsbetiae_contig1856:12767..13420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1856.5410.1 ID=mRNA_L-elsbetiae_contig1856.5410.1|Name=mRNA_L-elsbetiae_contig1856.5410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:12767..13420- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGAAGGAACTACAATCATGCTAGCAGCTCTATCGACGGTGCTAAT
CCTGTATGTCATACAACACGAAAGGAAGTCATCGCGCCCATTTTTGTCCA
TAGTGGGGTTGAAAAAGAAGAAACCTGTTGCAACACTCGGCGCATCGGGC
TGCAATAACGTCTCGATTGACTCCCCTGATTTCGCGCGTTGTTCAACAAC
CCTTGGGAGCGGGAGGTCAGTGCTGCGCTCGAGGCCTAGGGGCGACAATA
TTGTCTCCACCTTCACCAAAGACAACTACGCCGGCGAGAAACTAGGAAAC
CCTTTCTCCGTAAGGTCGGGCCCAAACCTCGGAAGCGGAGAAGCTTTTCC
ATTCTCCTCCAAAAGTGGAGACAATGTCTCATCATTCTCGGAGATTAAGC
GCGAAGCAAGTGGCGCAAAAGGCTCGGCTAAAACAAAGTTGCTCGGCGAC
AAGAAAAATAACGTACGGGGACAAAACTTTGTCTCCAACATAAGACAAAA
GACTCTTAATTCACTAGGCGCAGCCGTCTCTCCATCGTCGACCAAGCTGG
GGGCAAGTGCCAAGGACATTGCACAGGCTACAAACAAACTCAAAGACACA
AACACCGTCTCGTCCAATAGTGGAGGAAACCTGAATCTTCTACACCCCCT
CTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1856:12767..13420-

>mRNA_L-elsbetiae_contig1856.5410.1 ID=mRNA_L-elsbetiae_contig1856.5410.1|Name=mRNA_L-elsbetiae_contig1856.5410.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1152bp|location=Sequence derived from alignment at L-elsbetiae_contig1856:12767..13420- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGAAGGAACTACAATCATGCTAGCAGCTCTATCGACGGTGCTAAT
CCTGTATGTCATACAACACGAAAGGAAGTCATCGCGCCCATTTTTGTCCA
TAGTGGGGTTGAAAAAGAAGAAACCTGTTGCAACACTCGGCGCATCGGGC
TGCAATAACGTCTCGATTGACTCCCCTGATTTCGCGCGTTGTTCAACAAC
CCTTGGGAGCGGGAGGTCAGTGCTGCGCTCGAGGCCTAGGGGCGACAATA
TTGTCTCCACCTTCACCAAAGACAACTACGCCGGCGAGAAACTAGGAAAC
CCTTTCTCCGTAAGGTCGGGCCCAAACCTCGGAAGCGGAGAAGCTTTTCC
ATTCTCCTCCAAAAGTGGAGACAATATGTCGGAAGGAACTACAATCATGC
TAGCAGCTCTATCGACGGTGCTAATCCTGTATGTCATACAACACGAAAGG
AAGTCATCGCGCCCATTTTTGTCCATAGTGGGGTTGAAAAAGAAGAAACC
TGTTGCAACACTCGGCGCATCGGGCTGCAATAACGTCTCGATTGACTCCC
CTGATTTCGCGCGTTGTTCAACAACCCTTGGGAGCGGGAGGTCAGTGCTG
CGCTCGAGGCCTAGGGGCGACAATATTGTCTCCACCTTCACCAAAGACAA
CTACGCCGGCGAGAAACTAGGAAACCCTTTCTCCGTAAGGTCGGGCCCAA
ACCTCGGAAGCGGAGAAGCTTTTCCATTCTCCTCCAAAAGTGGAGACAAT
AAAAATAACGTACGGGGACAAAACTTTGTCTCCAACATAAGACAAAAGAC
TCTTAATTCACTAGGCGCAGCCGTCTCTCCATCGTCGACCAAGCTGGGGG
CAAGTGCCAAGGACATTGCACAGGCTACAAACAAACTCAAAGACACAAAC
ACCGTCTCGTCCAATAGTGGAGGAAACCTGAATCTTCTACACCCCCTCTA
GAAAAATAACGTACGGGGACAAAACTTTGTCTCCAACATAAGACAAAAGA
CTCTTAATTCACTAGGCGCAGCCGTCTCTCCATCGTCGACCAAGCTGGGG
GCAAGTGCCAAGGACATTGCACAGGCTACAAACAAACTCAAAGACACAAA
CACCGTCTCGTCCAATAGTGGAGGAAACCTGAATCTTCTACACCCCCTCT
AG
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