mRNA_L-elsbetiae_contig1849.5375.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1849.5375.1
Unique NamemRNA_L-elsbetiae_contig1849.5375.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1849.5375.1 vs. uniprot
Match: A0A7S2CD11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CD11_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.980e-9
Identity = 27/58 (46.55%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   13 EFLKEEGRTAEDLFSDMKDAKENNYTALFEEHEYHGFVQSVLDAMEYKSFYRLMLTAA 186
            +FL+ EG ++ + ++  KDA E+NYTALFEEH++H FV ++L +M Y+ F+ +M  AA
Sbjct:   96 QFLEGEGCSSAEFYAQCKDAIEDNYTALFEEHQHHWFVDALLASMSYEHFFEMMTKAA 153
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BLAST of mRNA_L-elsbetiae_contig1849.5375.1 vs. uniprot
Match: A0A7S4A6K5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6K5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.820e-8
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 ATTSEFLKEEGRTAEDLFSDMKDAKENNYTALFEEHEYHGFVQSVLDAMEYKSFYRLMLTAA 186
            A    FL E+  + ++  + ++DA E+ Y ALFEEHE+HG+V S   A+ Y+ FYR M+ AA
Sbjct:   81 AAIEAFLSEKAFSLQEFQAQLRDAVEDRYCALFEEHEHHGWVDSCFAAVSYEHFYRRMVAAA 142
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BLAST of mRNA_L-elsbetiae_contig1849.5375.1 vs. uniprot
Match: A0A7S2SCS0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCS0_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 8.800e-7
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   13 EFLKEEGRTAEDLFSDMKDAKENNYTALFEEHEYHGFVQSVLDAMEYKSFYRLMLTAA 186
            +FL+ +G ++ D FS  +DA E+ +  LFEEH +H FV ++L +M Y+ F+  M  AA
Sbjct:   89 DFLRTQGCSSADFFSQCRDALEDRFVPLFEEHHHHWFVDALLSSMSYEHFFSSMCEAA 146
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BLAST of mRNA_L-elsbetiae_contig1849.5375.1 vs. uniprot
Match: A0A7S3JYZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYZ2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.530e-6
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   13 EFLKEEGRTAEDLFSDMKDAKENNYTALFEEHEYHGFVQSVLDAMEYKSFYRLM 174
            +FL  +  +   LF  M+DAK + YTALFEEH++H +V S+L  + ++ F +LM
Sbjct:   88 DFLHHQSLSMSQLFEQMEDAKLDRYTALFEEHQHHAWVDSILAVLSFEYFVQLM 141
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1849.5375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2CD11_9STRA1.980e-946.55Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S4A6K5_9STRA4.820e-843.55Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S2SCS0_9STRA8.800e-741.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3JYZ2_9STRA5.530e-642.59Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1849contigL-elsbetiae_contig1849:17406..18220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815770.3964539-CDS-L-elsbetiae_contig1849:17405..175251622815770.3964539-CDS-L-elsbetiae_contig1849:17405..17525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 17406..17525 -
1691683091.0207953-CDS-L-elsbetiae_contig1849:17405..175251691683091.0207953-CDS-L-elsbetiae_contig1849:17405..17525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 17406..17525 -
1622815770.4106417-CDS-L-elsbetiae_contig1849:18154..182201622815770.4106417-CDS-L-elsbetiae_contig1849:18154..18220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 18155..18220 -
1691683091.030454-CDS-L-elsbetiae_contig1849:18154..182201691683091.030454-CDS-L-elsbetiae_contig1849:18154..18220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1849 18155..18220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1849.5375.1prot_L-elsbetiae_contig1849.5375.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1849 17406..18220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1849.5375.1

>prot_L-elsbetiae_contig1849.5375.1 ID=prot_L-elsbetiae_contig1849.5375.1|Name=mRNA_L-elsbetiae_contig1849.5375.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
ATTSEFLKEEGRTAEDLFSDMKDAKENNYTALFEEHEYHGFVQSVLDAME
YKSFYRLMLTAA
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mRNA from alignment at L-elsbetiae_contig1849:17406..18220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1849.5375.1 ID=mRNA_L-elsbetiae_contig1849.5375.1|Name=mRNA_L-elsbetiae_contig1849.5375.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=815bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:17406..18220- (Laminarionema elsbetiae ELsaHSoW15)
GCGACTACATCAGAATTTTTGAAAGAGGAGGGGCGCACGGCCGAGGATCT
GTTTTCTGACATGAAGGTACACCATGATACCGTTGCTGCAGATGCTGACG
TATTTACGTGGTACGGTGGAAGTCCGTGCGGTATAACTCTAAGAAGGCGC
ACGCCGTCTCGCTTGACAGGCATTCGCTCTCGCCGCGCGGGCTCGCTCTC
GGTTTCGCTGCAAAAAGTAGGTTCGAAATACTTGAATTTGGCCGCAAAAC
ATCGGTACTTAGATTGCCAAAATATCGATCCACAATAAGCAGCTACCTGC
CGATTCCGGGCGTTGGCCCTCAAAAACCAACACGAGACTTCCAAATACTT
CGTATATCTGCAAAAGGGTCCTCCGCACCGAAGAAAAAATGACATTTTAC
CCTTTATTGAGCTGTGGGTGAAACGTAACGCGCACGGGTCGCGATTGCAT
GTGCGCCAGGGCGAATCATACAACGATTTCGCTGCGGCGATAGGATACGA
TAGTAACAAAATCATGTCAAGCTTATTATGTAGACGAGTCTTAACAACAC
CCGCCCAACCCCGCTCCGCATTTCGAAACACAAAGTACATAGGAGCTTGG
AGAAGACCGACCGGCAATGAATGGTGTACTAAACCCGCACCCATGTTTAA
GCCAGAGATAATCACGTTTCGCCAATCGCCGCTGCCTCTTTGCAGGATGC
CAAAGAAAACAACTACACGGCCCTCTTCGAAGAGCACGAGTATCACGGAT
TCGTGCAGAGCGTCCTCGATGCGATGGAGTACAAGTCATTCTACCGCCTC
ATGCTGACAGCGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1849:17406..18220-

>mRNA_L-elsbetiae_contig1849.5375.1 ID=mRNA_L-elsbetiae_contig1849.5375.1|Name=mRNA_L-elsbetiae_contig1849.5375.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig1849:17406..18220- (Laminarionema elsbetiae ELsaHSoW15)
GCGACTACATCAGAATTTTTGAAAGAGGAGGGGCGCACGGCCGAGGATCT
GTTTTCTGACATGAAGGCGACTACATCAGAATTTTTGAAAGAGGAGGGGC
GCACGGCCGAGGATCTGTTTTCTGACATGAAGGATGCCAAAGAAAACAAC
TACACGGCCCTCTTCGAAGAGCACGAGTATCACGGATTCGTGCAGAGCGT
CCTCGATGCGATGGAGTACAAGTCATTCTACCGCCTCATGCTGACAGCGG
CCGATGCCAAAGAAAACAACTACACGGCCCTCTTCGAAGAGCACGAGTAT
CACGGATTCGTGCAGAGCGTCCTCGATGCGATGGAGTACAAGTCATTCTA
CCGCCTCATGCTGACAGCGGCC
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