mRNA_L-elsbetiae_contig18380.5330.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18380.5330.1
Unique NamemRNA_L-elsbetiae_contig18380.5330.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18380.5330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18380contigL-elsbetiae_contig18380:663..1239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size577
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.67497-UTR-L-elsbetiae_contig18380:662..8341622815765.67497-UTR-L-elsbetiae_contig18380:662..834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18380 663..834 +
1691683088.1769812-UTR-L-elsbetiae_contig18380:662..8341691683088.1769812-UTR-L-elsbetiae_contig18380:662..834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18380 663..834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.6876562-CDS-L-elsbetiae_contig18380:834..12391622815765.6876562-CDS-L-elsbetiae_contig18380:834..1239Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18380 835..1239 +
1691683088.187278-CDS-L-elsbetiae_contig18380:834..12391691683088.187278-CDS-L-elsbetiae_contig18380:834..1239Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18380 835..1239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18380.5330.1prot_L-elsbetiae_contig18380.5330.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18380 835..1239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18380.5330.1

>prot_L-elsbetiae_contig18380.5330.1 ID=prot_L-elsbetiae_contig18380.5330.1|Name=mRNA_L-elsbetiae_contig18380.5330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MGRTFEGCVDVLHSHGYMCAHCCAPAESRPGVASHSIQYQSLESALYHHR
PLILRPAPKHRHLSQNTRSQQRRFVATTSGGNPNGDIHSTTSVPFGSQNH
RLHTYRYDTSLPLLGRSVCPLSPAPPPSASTIATS
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mRNA from alignment at L-elsbetiae_contig18380:663..1239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18380.5330.1 ID=mRNA_L-elsbetiae_contig18380.5330.1|Name=mRNA_L-elsbetiae_contig18380.5330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=577bp|location=Sequence derived from alignment at L-elsbetiae_contig18380:663..1239+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGGCGACAGCTTCCAACGTGGGCATCGGCAAATTCCCCCGGGATG
CATGCGCGGGCGAACACACTCGGGGGGGCTTTAATCAAACAAACGTGGTG
GCGGGGAGAGTCTACGCTAGAAAGCAGCTGCGTGGCCGGCTCACCGCCGG
CTCTTAGGTCGTACCATACTAAATGGGCAGGACCTTTGAGGGTTGCGTGG
ATGTTTTGCATTCGCATGGGTACATGTGCGCACACTGCTGTGCCCCCGCA
GAGAGCCGGCCGGGCGTTGCCTCACACTCGATACAATACCAGAGCCTTGA
GTCAGCTCTTTACCATCATCGCCCTTTGATTCTGCGACCGGCCCCCAAAC
ACCGTCATCTGTCGCAAAATACCCGCTCTCAACAAAGACGCTTTGTCGCC
ACCACGTCCGGGGGAAACCCAAACGGGGACATTCATTCCACGACAAGTGT
CCCCTTCGGATCGCAAAACCACCGCCTACATACATACAGATACGACACGT
CCCTGCCGCTACTTGGCCGGTCTGTGTGCCCCCTCTCCCCCGCGCCCCCC
CCCTCCGCGAGTACCATCGCCACGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18380:663..1239+

>mRNA_L-elsbetiae_contig18380.5330.1 ID=mRNA_L-elsbetiae_contig18380.5330.1|Name=mRNA_L-elsbetiae_contig18380.5330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig18380:663..1239+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCAGGACCTTTGAGGGTTGCGTGGATGTTTTGCATTCGCATGGGTA
CATGTGCGCACACTGCTGTGCCCCCGCAGAGAGCCGGCCGGGCGTTGCCT
CACACTCGATACAATACCAGAGCCTTGAGTCAGCTCTTTACCATCATCGC
CCTTTGATTCTGCGACCGGCCCCCAAACACCGTCATCTGTCGCAAAATAC
CCGCTCTCAACAAAGACGCTTTGTCGCCACCACGTCCGGGGGAAACCCAA
ACGGGGACATTCATTCCACGACAAGTGTCCCCTTCGGATCGCAAAACCAC
CGCCTACATACATACAGATACGACACGTCCCTGCCGCTACTTGGCCGGTC
TGTGTGCCCCCTCTCCCCCGCGCCCCCCCCCTCCGCGAGTACCATCGCCA
CGTCGATGGGCAGGACCTTTGAGGGTTGCGTGGATGTTTTGCATTCGCAT
GGGTACATGTGCGCACACTGCTGTGCCCCCGCAGAGAGCCGGCCGGGCGT
TGCCTCACACTCGATACAATACCAGAGCCTTGAGTCAGCTCTTTACCATC
ATCGCCCTTTGATTCTGCGACCGGCCCCCAAACACCGTCATCTGTCGCAA
AATACCCGCTCTCAACAAAGACGCTTTGTCGCCACCACGTCCGGGGGAAA
CCCAAACGGGGACATTCATTCCACGACAAGTGTCCCCTTCGGATCGCAAA
ACCACCGCCTACATACATACAGATACGACACGTCCCTGCCGCTACTTGGC
CGGTCTGTGTGCCCCCTCTCCCCCGCGCCCCCCCCCTCCGCGAGTACCAT
CGCCACGTCG
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