mRNA_L-elsbetiae_contig18379.5328.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18379.5328.1
Unique NamemRNA_L-elsbetiae_contig18379.5328.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig18379.5328.1 vs. uniprot
Match: A0A6H5KY37_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY37_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 5.060e-42
Identity = 89/158 (56.33%), Postives = 108/158 (68.35%), Query Frame = 2 
Query:    8 CSVEIGSAAGGD-GGGKGTIRRGCGMCDPADMERRRRDCLALFGRCLDVSDGAAY--GGVT----GVEVGHFGELRDHFVRQFCDHLACDSHNRPLAPRWEGKGAARRHPIPGGVGDGRSGMGMPKMFIIAVLVVGLIILYSTMALGHWSRRTQKDLR 460
            CSVEI +  G   G G GTIRRGCG CDPADMERRRR C ALF  C D S+G+A   GGV     G E G  G + D+FVRQFC+HLACD H+RPLAP  +G  A  RHP+P G  DG  G G P++F+IAV+V+GL+I Y++MA+   S  T+ DLR
Sbjct:  130 CSVEIHARGGSSLGEGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSNGSAGSDGGVVDAGPGRETGDSGSIGDYFVRQFCNHLACDDHHRPLAPPVDGGPANHRHPLPHGGVDG-VGTGKPRVFLIAVVVIGLVIFYASMAVRLRSTSTRHDLR 286
[Close]
BLAST of mRNA_L-elsbetiae_contig18379.5328.1 vs. uniprot
Match: D7FXP7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP7_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.910e-14
Identity = 48/82 (58.54%), Postives = 52/82 (63.41%), Query Frame = 2 
Query:    8 CSVEIGSAAGGD-GGGKGTIRRGCGMCDPADMERRRRDCLALFGRCLDVSDGAAY--GGVT----GVEVGHFGELRDHFVRQ 232
            CSVEI +  G   G G GTIRRGCG CDPADMERRRR C ALF  C D S G+A   GG+     G E G FG   D+FVRQ
Sbjct:  130 CSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQ 211
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18379.5328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY37_9PHAE5.060e-4256.33C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FXP7_ECTSI1.910e-1458.54C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18379contigL-elsbetiae_contig18379:1062..2681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-28_001570.1
Exons3
Model size918
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18379.5328.1prot_L-elsbetiae_contig18379.5328.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18379 1141..2358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.4714577-UTR-L-elsbetiae_contig18379:1061..11401622815765.4714577-UTR-L-elsbetiae_contig18379:1061..1140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18379 1062..1140 +
1691683088.0457444-UTR-L-elsbetiae_contig18379:1061..11401691683088.0457444-UTR-L-elsbetiae_contig18379:1061..1140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18379 1062..1140 +
1622815765.5230935-UTR-L-elsbetiae_contig18379:2358..26811622815765.5230935-UTR-L-elsbetiae_contig18379:2358..2681Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18379 2359..2681 +
1691683088.0879812-UTR-L-elsbetiae_contig18379:2358..26811691683088.0879812-UTR-L-elsbetiae_contig18379:2358..2681Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig18379 2359..2681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.4846752-CDS-L-elsbetiae_contig18379:1140..11991622815765.4846752-CDS-L-elsbetiae_contig18379:1140..1199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18379 1141..1199 +
1691683088.0591786-CDS-L-elsbetiae_contig18379:1140..11991691683088.0591786-CDS-L-elsbetiae_contig18379:1140..1199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18379 1141..1199 +
1622815765.5022388-CDS-L-elsbetiae_contig18379:1559..16531622815765.5022388-CDS-L-elsbetiae_contig18379:1559..1653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18379 1560..1653 +
1691683088.0690958-CDS-L-elsbetiae_contig18379:1559..16531691683088.0690958-CDS-L-elsbetiae_contig18379:1559..1653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18379 1560..1653 +
1622815765.5121555-CDS-L-elsbetiae_contig18379:1995..23581622815765.5121555-CDS-L-elsbetiae_contig18379:1995..2358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18379 1996..2358 +
1691683088.0789876-CDS-L-elsbetiae_contig18379:1995..23581691683088.0789876-CDS-L-elsbetiae_contig18379:1995..2358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18379 1996..2358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18379.5328.1

>prot_L-elsbetiae_contig18379.5328.1 ID=prot_L-elsbetiae_contig18379.5328.1|Name=mRNA_L-elsbetiae_contig18379.5328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MCDPADMERRRRDCLALFGRCLDVSDGAAYGGVTGVEVGHFGELRDHFVR
QFCDHLACDSHNRPLAPRWEGKGAARRHPIPGGVGDGRSGMGMPKMFIIA
VLVVGLIILYSTMALGHWSRRTQKDLRHLSHAPRSFRRREEIGSNEGDSG
RSTSIRGSSALHRRGLNRGLG*
back to top

mRNA from alignment at L-elsbetiae_contig18379:1062..2681+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18379.5328.1 ID=mRNA_L-elsbetiae_contig18379.5328.1|Name=mRNA_L-elsbetiae_contig18379.5328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig18379:1062..2681+ (Laminarionema elsbetiae ELsaHSoW15)
CGGTGACTGCAGCGTAGAAATCGGCAGCGCGGCGGGGGGCGACGGCGGAG
GGAAGGGGACCATTCGGAGGGGGTGCGGGATGTGCGACCCCGCGGACATG
GAGCGGAGAAGGCGCGACTGCCTGGCGCTCTTCGGCAGGTACACATGTAT
GTAGGAAGAGCTGAGGTGTAAAATTTCTTCTCCGTTCGGTGCTGGACTCG
TTCCGCGGTGCTCGGCCTTTGTTGGCCGCAGCAGCGCTGTTTGTTGCACT
ATTGTTGTGGCCATTCACCCTCCCTTCAACCTCGACCGCTGGACCTCGCG
GACAGCCTGAGGCACACGGGCGTACGGCACTGTTCTGACGGACCGGGTGC
TGCATTGTTGGACACTCCAGATTTTGCCTTGGTCGGCATTGCGAAAAGTA
GTAGGTACCCCGTTTCGATAGTTCGCCTTTTGACCCGCTAAAGGTATGCC
CGCCTTCTTCAACGTCCATCATAATGATGTGCTGCCGCCAAACCACAGGT
GTTTGGATGTTTCGGATGGCGCCGCTTATGGAGGAGTAACTGGCGTGGAA
GTTGGACATTTTGGAGAACTCCGTGACCATTTTGTGCGCCAGGTAAAGAA
AGAAAAGCACGCCGGGGCCAGACTTGGCTGTTCTCGTTTTTAATACGTTT
TCATCTGCAAATGTCAGCGATCTACGTCCCGACTTGTGAAAAAGTCGTTC
CAAGGGGACTGTTGGGTCAAACCTCCCCTATTTTCTGGTTGATTGTGTTG
TTTTTTACCACAGCTGTATATACGTGTTTGCTCATCATATTGTATCTGTT
ATCTCCCTGTTTTCGTTTTTTTCACCTCCTTATACCCGGCATGCATTCGT
TTGACTTCGGCCACGCTAAACGAAAACACCCACGCAATTGCCCCCACGCC
TCACGTTTCTCTACGCCCCCGCTTCGCTGTTCAGTTCTGTGACCACCTCG
CCTGCGACTCCCACAATCGACCTCTTGCGCCCCGGTGGGAAGGAAAGGGG
GCAGCCCGCCGGCATCCCATCCCCGGAGGCGTCGGCGACGGCCGGAGTGG
CATGGGAATGCCCAAAATGTTTATAATCGCGGTTCTCGTCGTGGGATTGA
TAATCTTGTATAGCACCATGGCACTCGGGCATTGGTCTAGACGAACACAG
AAAGATCTACGCCACCTCTCGCACGCCCCGCGCTCCTTCCGCAGGAGGGA
AGAGATCGGTAGTAATGAAGGAGATAGTGGGAGGAGTACAAGTATCAGAG
GTTCTTCGGCGCTGCATCGGCGGGGTCTTAATCGAGGTCTTGGTTGAAAA
GCTCCTTTGAATGATAAGAAGTATATGTGTGTGTGTGTGAATCGTTCCAC
GCTCATATAGGCAGTGCATGTTTCCCATGGGAAATTCAACTGGGTGGGCT
TGTAGGTTTCCAGTCGTAAACCTGGCTTGCGTTTTGCGGTATGCAATCGA
GAAGGAAGATATTGTATTCCGTCAGTATTGTTGTCCCTTCAATGAATGCT
GGCTTTGTGGGATGTGTAAATAATGTTGGCGGCGCTTTTTTTTCGCGGTG
GAACGATACCCCCCGGCACGTAGCGCGTGTGTATATTATCTCATCACGAA
ACGCATTTTGTACCCACCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18379:1062..2681+

>mRNA_L-elsbetiae_contig18379.5328.1 ID=mRNA_L-elsbetiae_contig18379.5328.1|Name=mRNA_L-elsbetiae_contig18379.5328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig18379:1062..2681+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGACCCCGCGGACATGGAGCGGAGAAGGCGCGACTGCCTGGCGCT
CTTCGGCAGATGTGCGACCCCGCGGACATGGAGCGGAGAAGGCGCGACTG
CCTGGCGCTCTTCGGCAGGTGTTTGGATGTTTCGGATGGCGCCGCTTATG
GAGGAGTAACTGGCGTGGAAGTTGGACATTTTGGAGAACTCCGTGACCAT
TTTGTGCGCCAGGTGTTTGGATGTTTCGGATGGCGCCGCTTATGGAGGAG
TAACTGGCGTGGAAGTTGGACATTTTGGAGAACTCCGTGACCATTTTGTG
CGCCAGTTCTGTGACCACCTCGCCTGCGACTCCCACAATCGACCTCTTGC
GCCCCGGTGGGAAGGAAAGGGGGCAGCCCGCCGGCATCCCATCCCCGGAG
GCGTCGGCGACGGCCGGAGTGGCATGGGAATGCCCAAAATGTTTATAATC
GCGGTTCTCGTCGTGGGATTGATAATCTTGTATAGCACCATGGCACTCGG
GCATTGGTCTAGACGAACACAGAAAGATCTACGCCACCTCTCGCACGCCC
CGCGCTCCTTCCGCAGGAGGGAAGAGATCGGTAGTAATGAAGGAGATAGT
GGGAGGAGTACAAGTATCAGAGGTTCTTCGGCGCTGCATCGGCGGGGTCT
TAATCGAGGTCTTGGTTGATTCTGTGACCACCTCGCCTGCGACTCCCACA
ATCGACCTCTTGCGCCCCGGTGGGAAGGAAAGGGGGCAGCCCGCCGGCAT
CCCATCCCCGGAGGCGTCGGCGACGGCCGGAGTGGCATGGGAATGCCCAA
AATGTTTATAATCGCGGTTCTCGTCGTGGGATTGATAATCTTGTATAGCA
CCATGGCACTCGGGCATTGGTCTAGACGAACACAGAAAGATCTACGCCAC
CTCTCGCACGCCCCGCGCTCCTTCCGCAGGAGGGAAGAGATCGGTAGTAA
TGAAGGAGATAGTGGGAGGAGTACAAGTATCAGAGGTTCTTCGGCGCTGC
ATCGGCGGGGTCTTAATCGAGGTCTTGGTTGA
back to top