Homology
BLAST of mRNA_L-elsbetiae_contig18379.5328.1 vs. uniprot
Match:
A0A6H5KY37_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY37_9PHAE)
HSP 1 Score: 157 bits (396), Expect = 5.060e-42
Identity = 89/158 (56.33%), Postives = 108/158 (68.35%), Query Frame = 2
Query: 8 CSVEIGSAAGGD-GGGKGTIRRGCGMCDPADMERRRRDCLALFGRCLDVSDGAAY--GGVT----GVEVGHFGELRDHFVRQFCDHLACDSHNRPLAPRWEGKGAARRHPIPGGVGDGRSGMGMPKMFIIAVLVVGLIILYSTMALGHWSRRTQKDLR 460
CSVEI + G G G GTIRRGCG CDPADMERRRR C ALF C D S+G+A GGV G E G G + D+FVRQFC+HLACD H+RPLAP +G A RHP+P G DG G G P++F+IAV+V+GL+I Y++MA+ S T+ DLR
Sbjct: 130 CSVEIHARGGSSLGEGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSNGSAGSDGGVVDAGPGRETGDSGSIGDYFVRQFCNHLACDDHHRPLAPPVDGGPANHRHPLPHGGVDG-VGTGKPRVFLIAVVVIGLVIFYASMAVRLRSTSTRHDLR 286
BLAST of mRNA_L-elsbetiae_contig18379.5328.1 vs. uniprot
Match:
D7FXP7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP7_ECTSI)
HSP 1 Score: 81.3 bits (199), Expect = 1.910e-14
Identity = 48/82 (58.54%), Postives = 52/82 (63.41%), Query Frame = 2
Query: 8 CSVEIGSAAGGD-GGGKGTIRRGCGMCDPADMERRRRDCLALFGRCLDVSDGAAY--GGVT----GVEVGHFGELRDHFVRQ 232
CSVEI + G G G GTIRRGCG CDPADMERRRR C ALF C D S G+A GG+ G E G FG D+FVRQ
Sbjct: 130 CSVEIHAGGGSSLGTGAGTIRRGCGACDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQ 211
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18379.5328.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 5.06e-42 / Id = 56.33 Expect = 1.91e-14 / Id = 58.54 Sequence A0A6H5KY37_9PHAE D7FXP7_ECTSI
Match Name E-value Identity Description
A0A6H5KY37_9PHAE 5.060e-42 56.33 C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FXP7_ECTSI 1.910e-14 58.54 C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description C2H2 zinc finger protein
Ec32 ortholog Ec-28_001570.1
Exons 3
Model size 918
Cds size 516
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815765.4714577-UTR-L-elsbetiae_contig18379:1061..1140 1622815765.4714577-UTR-L-elsbetiae_contig18379:1061..1140 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig18379 1062..1140 +
1691683088.0457444-UTR-L-elsbetiae_contig18379:1061..1140 1691683088.0457444-UTR-L-elsbetiae_contig18379:1061..1140 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig18379 1062..1140 +
1622815765.5230935-UTR-L-elsbetiae_contig18379:2358..2681 1622815765.5230935-UTR-L-elsbetiae_contig18379:2358..2681 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig18379 2359..2681 +
1691683088.0879812-UTR-L-elsbetiae_contig18379:2358..2681 1691683088.0879812-UTR-L-elsbetiae_contig18379:2358..2681 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig18379 2359..2681 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815765.4846752-CDS-L-elsbetiae_contig18379:1140..1199 1622815765.4846752-CDS-L-elsbetiae_contig18379:1140..1199 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18379 1141..1199 +
1691683088.0591786-CDS-L-elsbetiae_contig18379:1140..1199 1691683088.0591786-CDS-L-elsbetiae_contig18379:1140..1199 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18379 1141..1199 +
1622815765.5022388-CDS-L-elsbetiae_contig18379:1559..1653 1622815765.5022388-CDS-L-elsbetiae_contig18379:1559..1653 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18379 1560..1653 +
1691683088.0690958-CDS-L-elsbetiae_contig18379:1559..1653 1691683088.0690958-CDS-L-elsbetiae_contig18379:1559..1653 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18379 1560..1653 +
1622815765.5121555-CDS-L-elsbetiae_contig18379:1995..2358 1622815765.5121555-CDS-L-elsbetiae_contig18379:1995..2358 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18379 1996..2358 +
1691683088.0789876-CDS-L-elsbetiae_contig18379:1995..2358 1691683088.0789876-CDS-L-elsbetiae_contig18379:1995..2358 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig18379 1996..2358 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18379.5328.1
>prot_L-elsbetiae_contig18379.5328.1 ID=prot_L-elsbetiae_contig18379.5328.1|Name=mRNA_L-elsbetiae_contig18379.5328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MCDPADMERRRRDCLALFGRCLDVSDGAAYGGVTGVEVGHFGELRDHFVR QFCDHLACDSHNRPLAPRWEGKGAARRHPIPGGVGDGRSGMGMPKMFIIA VLVVGLIILYSTMALGHWSRRTQKDLRHLSHAPRSFRRREEIGSNEGDSG RSTSIRGSSALHRRGLNRGLG* back to top mRNA from alignment at L-elsbetiae_contig18379:1062..2681+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18379.5328.1 ID=mRNA_L-elsbetiae_contig18379.5328.1|Name=mRNA_L-elsbetiae_contig18379.5328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig18379:1062..2681+ (Laminarionema elsbetiae ELsaHSoW15)CGGTGACTGCAGCGTAGAAATCGGCAGCGCGGCGGGGGGCGACGGCGGAG
GGAAGGGGACCATTCGGAGGGGGTGCGGG ATGTGCGACCCCGCGGACATG
GAGCGGAGAAGGCGCGACTGCCTGGCGCTCTTCGGCAG GTACACATGTAT
GTAGGAAGAGCTGAGGTGTAAAATTTCTTCTCCGTTCGGTGCTGGACTCG
TTCCGCGGTGCTCGGCCTTTGTTGGCCGCAGCAGCGCTGTTTGTTGCACT
ATTGTTGTGGCCATTCACCCTCCCTTCAACCTCGACCGCTGGACCTCGCG
GACAGCCTGAGGCACACGGGCGTACGGCACTGTTCTGACGGACCGGGTGC
TGCATTGTTGGACACTCCAGATTTTGCCTTGGTCGGCATTGCGAAAAGTA
GTAGGTACCCCGTTTCGATAGTTCGCCTTTTGACCCGCTAAAGGTATGCC
CGCCTTCTTCAACGTCCATCATAATGATGTGCTGCCGCCAAACCACAGGT
GTTTGGATGTTTCGGATGGCGCCGCTTATGGAGGAGTAACTGGCGTGGAA
GTTGGACATTTTGGAGAACTCCGTGACCATTTTGTGCGCCAG GTAAAGAA
AGAAAAGCACGCCGGGGCCAGACTTGGCTGTTCTCGTTTTTAATACGTTT
TCATCTGCAAATGTCAGCGATCTACGTCCCGACTTGTGAAAAAGTCGTTC
CAAGGGGACTGTTGGGTCAAACCTCCCCTATTTTCTGGTTGATTGTGTTG
TTTTTTACCACAGCTGTATATACGTGTTTGCTCATCATATTGTATCTGTT
ATCTCCCTGTTTTCGTTTTTTTCACCTCCTTATACCCGGCATGCATTCGT
TTGACTTCGGCCACGCTAAACGAAAACACCCACGCAATTGCCCCCACGCC
TCACGTTTCTCTACGCCCCCGCTTCGCTGTTCAGTTCTGTGACCACCTCG
CCTGCGACTCCCACAATCGACCTCTTGCGCCCCGGTGGGAAGGAAAGGGG
GCAGCCCGCCGGCATCCCATCCCCGGAGGCGTCGGCGACGGCCGGAGTGG
CATGGGAATGCCCAAAATGTTTATAATCGCGGTTCTCGTCGTGGGATTGA
TAATCTTGTATAGCACCATGGCACTCGGGCATTGGTCTAGACGAACACAG
AAAGATCTACGCCACCTCTCGCACGCCCCGCGCTCCTTCCGCAGGAGGGA
AGAGATCGGTAGTAATGAAGGAGATAGTGGGAGGAGTACAAGTATCAGAG
GTTCTTCGGCGCTGCATCGGCGGGGTCTTAATCGAGGTCTTGGTTGA AAA
GCTCCTTTGAATGATAAGAAGTATATGTGTGTGTGTGTGAATCGTTCCAC
GCTCATATAGGCAGTGCATGTTTCCCATGGGAAATTCAACTGGGTGGGCT
TGTAGGTTTCCAGTCGTAAACCTGGCTTGCGTTTTGCGGTATGCAATCGA
GAAGGAAGATATTGTATTCCGTCAGTATTGTTGTCCCTTCAATGAATGCT
GGCTTTGTGGGATGTGTAAATAATGTTGGCGGCGCTTTTTTTTCGCGGTG
GAACGATACCCCCCGGCACGTAGCGCGTGTGTATATTATCTCATCACGAA
ACGCATTTTGTACCCACCGC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18379:1062..2681+
>mRNA_L-elsbetiae_contig18379.5328.1 ID=mRNA_L-elsbetiae_contig18379.5328.1|Name=mRNA_L-elsbetiae_contig18379.5328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig18379:1062..2681+ (Laminarionema elsbetiae ELsaHSoW15) ATGTGCGACCCCGCGGACATGGAGCGGAGAAGGCGCGACTGCCTGGCGCT CTTCGGCAGATGTGCGACCCCGCGGACATGGAGCGGAGAAGGCGCGACTG CCTGGCGCTCTTCGGCAGGTGTTTGGATGTTTCGGATGGCGCCGCTTATG GAGGAGTAACTGGCGTGGAAGTTGGACATTTTGGAGAACTCCGTGACCAT TTTGTGCGCCAGGTGTTTGGATGTTTCGGATGGCGCCGCTTATGGAGGAG TAACTGGCGTGGAAGTTGGACATTTTGGAGAACTCCGTGACCATTTTGTG CGCCAGTTCTGTGACCACCTCGCCTGCGACTCCCACAATCGACCTCTTGC GCCCCGGTGGGAAGGAAAGGGGGCAGCCCGCCGGCATCCCATCCCCGGAG GCGTCGGCGACGGCCGGAGTGGCATGGGAATGCCCAAAATGTTTATAATC GCGGTTCTCGTCGTGGGATTGATAATCTTGTATAGCACCATGGCACTCGG GCATTGGTCTAGACGAACACAGAAAGATCTACGCCACCTCTCGCACGCCC CGCGCTCCTTCCGCAGGAGGGAAGAGATCGGTAGTAATGAAGGAGATAGT GGGAGGAGTACAAGTATCAGAGGTTCTTCGGCGCTGCATCGGCGGGGTCT TAATCGAGGTCTTGGTTGATTCTGTGACCACCTCGCCTGCGACTCCCACA ATCGACCTCTTGCGCCCCGGTGGGAAGGAAAGGGGGCAGCCCGCCGGCAT CCCATCCCCGGAGGCGTCGGCGACGGCCGGAGTGGCATGGGAATGCCCAA AATGTTTATAATCGCGGTTCTCGTCGTGGGATTGATAATCTTGTATAGCA CCATGGCACTCGGGCATTGGTCTAGACGAACACAGAAAGATCTACGCCAC CTCTCGCACGCCCCGCGCTCCTTCCGCAGGAGGGAAGAGATCGGTAGTAA TGAAGGAGATAGTGGGAGGAGTACAAGTATCAGAGGTTCTTCGGCGCTGC ATCGGCGGGGTCTTAATCGAGGTCTTGGTTGA back to top