mRNA_L-elsbetiae_contig18254.5280.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18254.5280.1
Unique NamemRNA_L-elsbetiae_contig18254.5280.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Match: D8LTU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTU5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.720e-20
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1
Query:    1 KEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDDRPIQ 126
            KE+TEEGRDKYTSVLAVLLAGSF+IPMVQYWWYIRDDDR I+
Sbjct:  118 KEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDDREIR 159          
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Match: A0A835ZB47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB47_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.730e-13
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 KEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 114
            KE TE+G++KY +VL +LL GSF+IPMVQYWWYIRD+D
Sbjct:  109 KEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDED 146          
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Match: A0A7R9U6V2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6V2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.250e-11
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 KEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDDRPIQ 126
            KE+T  G+++Y +VL VL+ GSFIIPM QYWWYI+DD+ P+Q
Sbjct:   96 KEETASGKNRYVAVLGVLVVGSFIIPMAQYWWYIKDDE-PLQ 136          
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Match: A0A1Z5K6I3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6I3_FISSO)

HSP 1 Score: 60.5 bits (145), Expect = 3.140e-10
Identity = 22/36 (61.11%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    7 DTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 114
            +T+  + KYT++LA+L+ GSFIIPM QYWWY++DDD
Sbjct:  103 ETKTKKGKYTALLAILIVGSFIIPMAQYWWYVKDDD 138          
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Match: A0A7S0BLB9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BLB9_9RHOD)

HSP 1 Score: 59.3 bits (142), Expect = 8.030e-10
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    1 KEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDD 111
            K++TE+G+ KYT+V+  LL  SF+IPMVQY+WY++DD
Sbjct:  119 KDETEKGKKKYTTVVVALLVASFVIPMVQYYWYVKDD 155          
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Match: A0A7S3L8Q2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8Q2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.740e-9
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    7 DTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDDRPIQ 126
            +T+  + KYT++LAVL+ GSFIIPM QY+WY+RDDD   Q
Sbjct:  102 ETKTKKGKYTALLAVLIVGSFIIPMAQYFWYVRDDDSSDQ 141          
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Match: A0A7R9WM32_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM32_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.740e-9
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    7 DTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDDRPIQ 126
            +T+  + KYT++LA+L+ GSFI+PM QY+WY+RDDD   Q
Sbjct:  105 ETKTKKGKYTAILAILIVGSFIVPMAQYFWYVRDDDSSDQ 144          
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Match: B7FPJ6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPJ6_PHATC)

HSP 1 Score: 58.5 bits (140), Expect = 1.770e-9
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    7 DTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 114
            +T+  + KYT++LAVL+ GSFIIPM QY+WY+RDDD
Sbjct:  103 ETKSKKGKYTALLAVLIVGSFIIPMAQYFWYVRDDD 138          
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Match: A0A7S2Y3Q4_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y3Q4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.860e-9
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    7 DTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDD 114
            +T+  + KYT++LAVL+ GSFIIPM QY+WY+RDDD
Sbjct:  107 ETKSKKGKYTALLAVLIVGSFIIPMAQYFWYVRDDD 142          
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Match: A0A7S2B691_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B691_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-9
Identity = 23/37 (62.16%), Postives = 32/37 (86.49%), Query Frame = 1
Query:    1 KEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDD 111
            K+DT +G+ KY +VL VLL GSF+IPM+QY+WY+R+D
Sbjct:  111 KDDTVKGKKKYIAVLGVLLFGSFVIPMLQYFWYVRED 147          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18254.5280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTU5_ECTSI2.720e-2090.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZB47_9STRA3.730e-1371.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U6V2_9STRA1.250e-1161.90Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5K6I3_FISSO3.140e-1061.11Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S0BLB9_9RHOD8.030e-1059.46Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3L8Q2_9STRA1.740e-960.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7R9WM32_9STRA1.740e-955.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
B7FPJ6_PHATC1.770e-963.89Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2Y3Q4_9STRA1.860e-963.89Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A7S2B691_9STRA1.940e-962.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18254contigL-elsbetiae_contig18254:2071..2199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog2880.D8LTU5
Hectar predicted targeting categorysignal anchor
EggNOG OGs2CAH2@1,2SAK7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_002720.1
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.3495204-CDS-L-elsbetiae_contig18254:2070..21991622815761.3495204-CDS-L-elsbetiae_contig18254:2070..2199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18254 2071..2199 -
1691683085.440844-CDS-L-elsbetiae_contig18254:2070..21991691683085.440844-CDS-L-elsbetiae_contig18254:2070..2199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18254 2071..2199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18254.5280.1prot_L-elsbetiae_contig18254.5280.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18254 2071..2199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18254.5280.1

>prot_L-elsbetiae_contig18254.5280.1 ID=prot_L-elsbetiae_contig18254.5280.1|Name=mRNA_L-elsbetiae_contig18254.5280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=43bp
KEDTEEGRDKYTSVLAVLLAGSFIIPMVQYWWYIRDDDRPIQ*
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mRNA from alignment at L-elsbetiae_contig18254:2071..2199-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18254.5280.1 ID=mRNA_L-elsbetiae_contig18254.5280.1|Name=mRNA_L-elsbetiae_contig18254.5280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=129bp|location=Sequence derived from alignment at L-elsbetiae_contig18254:2071..2199- (Laminarionema elsbetiae ELsaHSoW15)
AAGGAGGACACGGAGGAGGGCCGGGACAAGTACACGTCGGTCCTGGCGGT GCTGCTGGCCGGATCGTTCATCATCCCCATGGTCCAGTACTGGTGGTACA TCCGCGACGATGACCGCCCCATCCAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18254:2071..2199-

>mRNA_L-elsbetiae_contig18254.5280.1 ID=mRNA_L-elsbetiae_contig18254.5280.1|Name=mRNA_L-elsbetiae_contig18254.5280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=258bp|location=Sequence derived from alignment at L-elsbetiae_contig18254:2071..2199- (Laminarionema elsbetiae ELsaHSoW15)
AAGGAGGACACGGAGGAGGGCCGGGACAAGTACACGTCGGTCCTGGCGGT
GCTGCTGGCCGGATCGTTCATCATCCCCATGGTCCAGTACTGGTGGTACA
TCCGCGACGATGACCGCCCCATCCAGTAAAAGGAGGACACGGAGGAGGGC
CGGGACAAGTACACGTCGGTCCTGGCGGTGCTGCTGGCCGGATCGTTCAT
CATCCCCATGGTCCAGTACTGGTGGTACATCCGCGACGATGACCGCCCCA
TCCAGTAA
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