prot_L-elsbetiae_contig18249.5277.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18249.5277.1
Unique Nameprot_L-elsbetiae_contig18249.5277.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length56
Homology
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BLAST of mRNA_L-elsbetiae_contig18249.5277.1 vs. uniprot
Match: A0A6H5L0N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.700e-23
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 0 
Query:    1 SSADVCLLSGVLCLHEWLRRVSLDGNPIDEEGLGFLCRALLKNGSIQSVSLNRC 54
            S+ADVCLL+GV+CLH+WLRRV LDGNPIDEEGLG+L RALL+NGS+Q+VSLNRC
Sbjct:  426 STADVCLLAGVICLHDWLRRVCLDGNPIDEEGLGYLSRALLRNGSVQTVSLNRC 479
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BLAST of mRNA_L-elsbetiae_contig18249.5277.1 vs. uniprot
Match: D7FM61_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM61_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.700e-23
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 0 
Query:    1 SSADVCLLSGVLCLHEWLRRVSLDGNPIDEEGLGFLCRALLKNGSIQSVSLNRC 54
            S+ADVCLL+GV+CLH+WLRRV LDGNPIDEEGLG+L RALL+NGS+Q+VSLNRC
Sbjct:  502 STADVCLLAGVICLHDWLRRVCLDGNPIDEEGLGYLSRALLRNGSVQTVSLNRC 555
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18249.5277.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0N8_9PHAE1.700e-2381.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM61_ECTSI1.700e-2381.48Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..55
e-value: 1.4E-7
score: 33.1
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 5..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18249contigL-elsbetiae_contig18249:1632..1799 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18249.5277.1mRNA_L-elsbetiae_contig18249.5277.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18249 1632..1799 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18249.5277.1 ID=prot_L-elsbetiae_contig18249.5277.1|Name=mRNA_L-elsbetiae_contig18249.5277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
SSADVCLLSGVLCLHEWLRRVSLDGNPIDEEGLGFLCRALLKNGSIQSVS
LNRCV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf