mRNA_L-elsbetiae_contig18249.5277.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18249.5277.1
Unique NamemRNA_L-elsbetiae_contig18249.5277.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig18249.5277.1 vs. uniprot
Match: A0A6H5L0N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.700e-23
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 SSADVCLLSGVLCLHEWLRRVSLDGNPIDEEGLGFLCRALLKNGSIQSVSLNRC 162
            S+ADVCLL+GV+CLH+WLRRV LDGNPIDEEGLG+L RALL+NGS+Q+VSLNRC
Sbjct:  426 STADVCLLAGVICLHDWLRRVCLDGNPIDEEGLGYLSRALLRNGSVQTVSLNRC 479
[Close]
BLAST of mRNA_L-elsbetiae_contig18249.5277.1 vs. uniprot
Match: D7FM61_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM61_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.700e-23
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 SSADVCLLSGVLCLHEWLRRVSLDGNPIDEEGLGFLCRALLKNGSIQSVSLNRC 162
            S+ADVCLL+GV+CLH+WLRRV LDGNPIDEEGLG+L RALL+NGS+Q+VSLNRC
Sbjct:  502 STADVCLLAGVICLHDWLRRVCLDGNPIDEEGLGYLSRALLRNGSVQTVSLNRC 555
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18249.5277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0N8_9PHAE1.700e-2381.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM61_ECTSI1.700e-2381.48Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18249contigL-elsbetiae_contig18249:1632..1799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue8.9e-20
Seed eggNOG ortholog2880.D7FM61
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.1444385-CDS-L-elsbetiae_contig18249:1631..17991622815761.1444385-CDS-L-elsbetiae_contig18249:1631..1799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18249 1632..1799 -
1691683085.3126786-CDS-L-elsbetiae_contig18249:1631..17991691683085.3126786-CDS-L-elsbetiae_contig18249:1631..1799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18249 1632..1799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18249.5277.1prot_L-elsbetiae_contig18249.5277.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18249 1632..1799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18249.5277.1

>prot_L-elsbetiae_contig18249.5277.1 ID=prot_L-elsbetiae_contig18249.5277.1|Name=mRNA_L-elsbetiae_contig18249.5277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
SSADVCLLSGVLCLHEWLRRVSLDGNPIDEEGLGFLCRALLKNGSIQSVS
LNRCV*
back to top

mRNA from alignment at L-elsbetiae_contig18249:1632..1799-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18249.5277.1 ID=mRNA_L-elsbetiae_contig18249.5277.1|Name=mRNA_L-elsbetiae_contig18249.5277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=168bp|location=Sequence derived from alignment at L-elsbetiae_contig18249:1632..1799- (Laminarionema elsbetiae ELsaHSoW15)
TCGTCGGCGGACGTCTGCCTGCTGTCGGGCGTGCTCTGCCTGCACGAGTG
GTTGCGCCGCGTGTCGCTCGACGGCAACCCCATCGACGAGGAAGGGCTGG
GTTTCCTGTGCCGCGCGCTGCTGAAGAACGGGAGCATCCAGAGCGTCTCG
CTCAACAGGTGCGTCTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig18249:1632..1799-

>mRNA_L-elsbetiae_contig18249.5277.1 ID=mRNA_L-elsbetiae_contig18249.5277.1|Name=mRNA_L-elsbetiae_contig18249.5277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig18249:1632..1799- (Laminarionema elsbetiae ELsaHSoW15)
TCGTCGGCGGACGTCTGCCTGCTGTCGGGCGTGCTCTGCCTGCACGAGTG
GTTGCGCCGCGTGTCGCTCGACGGCAACCCCATCGACGAGGAAGGGCTGG
GTTTCCTGTGCCGCGCGCTGCTGAAGAACGGGAGCATCCAGAGCGTCTCG
CTCAACAGGTGCGTCTGATCGTCGGCGGACGTCTGCCTGCTGTCGGGCGT
GCTCTGCCTGCACGAGTGGTTGCGCCGCGTGTCGCTCGACGGCAACCCCA
TCGACGAGGAAGGGCTGGGTTTCCTGTGCCGCGCGCTGCTGAAGAACGGG
AGCATCCAGAGCGTCTCGCTCAACAGGTGCGTCTGA
back to top