mRNA_L-elsbetiae_contig18224.5267.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig18224.5267.1 vs. uniprot
Match: A0A6H5KDB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB3_9PHAE) HSP 1 Score: 278 bits (711), Expect = 2.240e-85 Identity = 170/373 (45.58%), Postives = 216/373 (57.91%), Query Frame = 1 Query: 115 MDTLPTIVLSSIASFARGGKLSGACRSTLEAIPELHYKISIMDRAESFSIGEDPDGALSSA-----HMGLQPSGALATGRMVTRVTVTGCTDNKDTKGGYQILEKVIQRVVEHSIPTLRSITVTGY-----RGKDSG-----------------------RVAAIIGALVPASAKRHRTAPRLARVELRHGANGVVKAGKAIGAGLWPALEELIVPNCHGNKGHFSGLSSALRSGRAPNLRVLNWDNQACSKE-GVDDSVLWALCAGKCPRVGRLSFTDSFWLSELRLDSLRGALQACPKLRELRMDCTRDPGKQLRDLTAALQAGDVPCLRSVLLRKSS--YRVVVPSTEEEVNALKRAAASRAPPIRLDVK 1125 +D LP +VL I SF LSG CR+TL I ELHYK+ + A ++ G S HMG+ SGALATGR V R+T+T + +D LE+ I+RVV+HSIPTLR IT+ GY R + SG AI+G LVP SAKRHR APRLARV L GA GV KAG+A+ GLWPALE L +C N GHF L+ LRSG AP LRVL WD+Q+ ++ VDD +L AL G+CP V LSFT + + E R+ L L CP+LRELRMDC+R P +LR L AL G VP L +L+R ++ YR ++ E+ ALKR AASR+PP+ L+++ Sbjct: 79 LDVLPGVVLREIVSFTTDSSLSGVCRTTLGGIRELHYKVDMAKVASAYFFGRLAAAYCSKTLELTDHMGIDASGALATGRAVVRITITHVHETQDPA-----LEQAIRRVVQHSIPTLREITIRGYPTWTGRARPSGGSCSIQYPPCARSPSAGAPHGPDAPGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVATGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSIRDVAVDDVILNALSWGQCPLVEHLSFTGNRFCPEHRITYLEEMLWVCPRLRELRMDCSRTPHHELRVLAGALAGGHVPRLERLLVRATAPYYR----DSDVELRALKRVAASRSPPVELELQ 442
BLAST of mRNA_L-elsbetiae_contig18224.5267.1 vs. uniprot
Match: D8LAY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAY2_ECTSI) HSP 1 Score: 264 bits (675), Expect = 6.900e-82 Identity = 154/298 (51.68%), Postives = 196/298 (65.77%), Query Frame = 1 Query: 259 SIGEDPDGALSSAHMGLQPSGALATGRMVTRVTVTGCTDNKDTK---GGYQILEKVIQRVVEHSIPTLRSITVTG---YRGKDSGRVAAIIGALVPASAKRHRTAPRLARVELRHGANGVVKAGKAIGAGLWPALEELIVPNCHGNKGHFSGLSSALRSGRAPNLRVLNWDNQACSKEG-VDDSVLWALCAGKCPRVGRLSFTDSFWLSELRLDSLRGALQACPKLRELRMDCTRDPGKQLRDLTAALQAGDVPCLRSVLLRKSS--YRVVVPSTEEEVNALKRAAASRAPPIRLDVK 1125 S G DP GA + HMGL+ SGALATGR + R+T+T ++ + Y+ LE+ + RVV HSIPTLR IT+ G + G+ RV AI+G LVP SAKRHR APRL+RV L GA GV KAG+A+ AGLWPALE L +C N GHF L+ LRSG AP LRVL WD+Q+ ++ VDD +L AL GKCP V RLSFT + + E + L AL CP+LRELRMDC+R P QLR L AL G VP L +L+R ++ YR ++ E+ ALKRAAASR+PP+ L+++ Sbjct: 8 SPGADPAGADLANHMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGR--ARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYR----DSDVELLALKRAAASRSPPVELELQ 299
BLAST of mRNA_L-elsbetiae_contig18224.5267.1 vs. uniprot
Match: D7FWR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR8_ECTSI) HSP 1 Score: 262 bits (670), Expect = 3.520e-81 Identity = 154/294 (52.38%), Postives = 191/294 (64.97%), Query Frame = 1 Query: 256 FSIGEDPDGALSSAHMGLQPSGALATGRMVTRVTVTGCTDNKDTKGGYQILEKVIQRVVEHSIPTLRSITVTGY-RGKDSGRVAAIIGALVPASAKRHRTAPRLARVELRHGANGVVKAGKAIGAGLWPALEELIVPNCHGNKGHFSGLSSALRSGRAPNLRVLNWDNQACSKE-GVDDSVLWALCAGKCPRVGRLSFTDSFWLSELRLDSLRGALQACPKLRELRMDCTRDPGKQLRDLTAALQAGDVPCLRSVLLRKSS--YRVVVPSTEEEVNALKRAAASRAPPIRLDVK 1125 +S EDP GA + HMGL SGALATGR V R+T+T +D LE+ I+RVV+HSIPTLR I + GY RV AI+G LVP SAKRHR APRLARV L GA GV KAG+A+ AGLWPALE L +C N GHF L+ LRSG AP LRVL WD+Q+ ++ VDD +L AL G+CP V RLSFT + + E R+ L L CP+LRELRMDC+R P QL L AL G VP L +L+R ++ YR ++ E+ ALKRAAASR+PP+ L+++ Sbjct: 11 YSPSEDPTGAELTNHMGLDASGALATGRAVVRITITYVHHFQDPA-----LEQAIRRVVQHSIPTLREIAIRGYPTWTGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYR----DSDVELLALKRAAASRSPPVELELQ 295
BLAST of mRNA_L-elsbetiae_contig18224.5267.1 vs. uniprot
Match: D7FWR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR9_ECTSI) HSP 1 Score: 254 bits (649), Expect = 2.620e-75 Identity = 175/424 (41.27%), Postives = 218/424 (51.42%), Query Frame = 1 Query: 115 MDTLPTIVLSSIASFARGGKLSGACRSTLEAIPELHYKISIMDRAESFSIGEDPDGALSSAHMGLQPSGALATGRMVTRVTVTGCTDNKDTKGGYQILEKVIQRVVEHSIPTLRSITVTGY----------------------------------------------------------------------------RGKDSGR--------VAAIIGALVPASAKRHRTAPRLARVELRHGANGVVKAGKAIGAGLWPALEELIVPNCHGNKGHFSGLSSALRSGRAPNLRVLNWDNQACSKE-GVDDSVLWALCAGKCPRVGRLSFTDSFWLSELRLDSLRGALQACPKLRELRMDCTRDPGKQLRDLTAALQAGDVPCLRSVLLRKSS--YRVVVPSTEEEVNALKRAAASRAPPIRLDVK 1125 +D LP +VL I SF LSG CR+TL AI ELHYKI M++ S + + + HMGL SGALATGR V R+T+T +D LE+ I+RVV+HSIPTLR I + Y RG SG V AI+G LVP SAKRHR APRLARV L GA GV KAG+A+ AGLWPALE L +C N GHF L+ LRSG AP LRVL WD+Q+ ++ VDD +L AL G+CP V RLSFT + + E R+ L L CP+LRELRMDC+R P QL L AL G VP L +L+R ++ YR ++ E+ ALKRAAASR+PP+ L+++ Sbjct: 106 LDVLPGVVLREIVSFTTDSSLSGVCRTTLGAIRELHYKID-MNKVSSAHYLKRSE---LTNHMGLDASGALATGRAVVRITITHVLHAQDPA-----LEQAIRRVVQHSIPTLREIAIRRYPTWNGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYR----DSDVELLALKRAAASRSPPVELELQ 516
BLAST of mRNA_L-elsbetiae_contig18224.5267.1 vs. uniprot
Match: A0A6H5KU71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU71_9PHAE) HSP 1 Score: 180 bits (456), Expect = 2.470e-50 Identity = 108/213 (50.70%), Postives = 134/213 (62.91%), Query Frame = 1 Query: 496 RVAAIIGALVPASAKRHRTAPRLARVELRHGANGVVKAGKAIGAGLWPALEELIVPNCHGNKGHFSGLSSALRSGRAPNLRVLNWDNQACSKEG-VDDSVLWALCAGKCPRVGRLSFTDSFWLSELRLDSLRGALQACPKLRELRMDCTRDPGKQLRDLTAALQAGDVPCLRSVLLRKSS--YRVVVPSTEEEVNALKRAAASRAPPIRLDVK 1125 RV AI G LVP SAKRHR A RLARV L GA G KAGKA+ AGL PALE +C N GHF L+ LRSG AP LRVL WD+Q+ ++ +DD +L AL G CP V RLSFT + + E + L CP+LRELRMDC+R P QLR L AL VP L +L+R ++ YR ++ E+ ALK AAASR+PP+ L+++ Sbjct: 13 RVGAIRGELVPLSAKRHRVARRLARVHLVDGATGAAKAGKAVAAGLRPALEVPTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSTIRDAALDDVILGALSWGHCPLVERLSFTGTRFCPEHSIRYLEEMFWVCPRLRELRMDCSRTPHHQLRVLAGALAGEHVPRLERLLVRATAPYYR----DSDVELLALKLAAASRSPPVALELQ 221
BLAST of mRNA_L-elsbetiae_contig18224.5267.1 vs. uniprot
Match: A0A6H5KEB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB8_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 9.600e-12 Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 115 MDTLPTIVLSSIASFARGGKLSGACRSTLEAIPELHYKISIMDRAESFSIGEDPDGALSSAHMGLQPSGALATGRMVTRVTVT 363 +D LP +VL I SF LSG CR+TL AI ELHYK+++ ED GA HMGL SGALATGR V R+T+T Sbjct: 68 LDVLPGVVLREIVSFTTDSSLSGVCRTTLGAIRELHYKVNMT---------EDVVGAEIKHHMGLDASGALATGRDVVRITIT 141 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18224.5267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig18224.5267.1 >prot_L-elsbetiae_contig18224.5267.1 ID=prot_L-elsbetiae_contig18224.5267.1|Name=mRNA_L-elsbetiae_contig18224.5267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=382bp MNPHHHHVDKRARGDSNNLNEILGSPPSAAAAAPATITMDTLPTIVLSSIback to top mRNA from alignment at L-elsbetiae_contig18224:700..2599+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig18224.5267.1 ID=mRNA_L-elsbetiae_contig18224.5267.1|Name=mRNA_L-elsbetiae_contig18224.5267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1900bp|location=Sequence derived from alignment at L-elsbetiae_contig18224:700..2599+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig18224:700..2599+ >mRNA_L-elsbetiae_contig18224.5267.1 ID=mRNA_L-elsbetiae_contig18224.5267.1|Name=mRNA_L-elsbetiae_contig18224.5267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2292bp|location=Sequence derived from alignment at L-elsbetiae_contig18224:700..2599+ (Laminarionema elsbetiae ELsaHSoW15)back to top |