prot_L-elsbetiae_contig18187.5243.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18187.5243.1
Unique Nameprot_L-elsbetiae_contig18187.5243.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length66
Homology
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: D8LKW8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW8_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.760e-32
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = 0
Query:    3 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEVSE 60
            SEKP+AEIEYAHDGTAVWDLGWHPVGHVLASG NDHTVKFWVRNRVGD+MGCKPE++E
Sbjct:  324 SEKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPELNE 381          
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A6H5JUK6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.060e-31
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0
Query:    1 LRSEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEV 58
            + SEKP+AEIEYAHDGTAVWDLGWHPVGHVLASG NDHTVKFWVRNRVGD+MGCKPEV
Sbjct:  168 IGSEKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPEV 225          
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A836CIR2_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.150e-20
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 0
Query:    3 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEV 58
            +E+P A I  AHD TAVWD+ WHP+GHV+A+G NDHTVKFW RNR GD +G +PEV
Sbjct:  324 NEQPEAVIPQAHDDTAVWDISWHPLGHVVATGSNDHTVKFWARNRPGDPLGVEPEV 379          
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: D2VL90_NAEGR (Guanine nucleotide-binding protein subunit beta-like protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VL90_NAEGR)

HSP 1 Score: 79.3 bits (194), Expect = 9.630e-16
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    3 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEVSEV 61
            +E P A+I+ AH  +AVWD+ WHP GH+L SG NDH+ KFWVRNR GD M  K  V E+
Sbjct:  421 NESPQAKIKEAHS-SAVWDIAWHPFGHILCSGSNDHSTKFWVRNRPGDKMDDKYNVHEL 478          
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A2P2I5D5_9CRUS (Pre-mRNA 3' end processing protein WDR33-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I5D5_9CRUS)

HSP 1 Score: 77.4 bits (189), Expect = 4.370e-15
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    3 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSM 52
            ++K    I+ AHDG  +WDL WHP+GH+LASG NDHT KFW RNR GD M
Sbjct:  121 NDKEVGNIDAAHDGI-IWDLAWHPLGHILASGSNDHTTKFWTRNRPGDKM 169          
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: T1K3C5_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1K3C5_TETUR)

HSP 1 Score: 77.4 bits (189), Expect = 4.680e-15
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 0
Query:    3 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCK 55
            +EK    +E AHD + VW L WHP+GH+LASG NDHT KFW RNR GD MG K
Sbjct:  348 TEKEVGGMELAHD-SVVWSLSWHPLGHILASGSNDHTCKFWTRNRPGDRMGDK 399          
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A1X6NUY8_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUY8_PORUM)

HSP 1 Score: 77.0 bits (188), Expect = 5.660e-15
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0
Query:    1 LRSEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMG 53
            +R  +P A I +AH  +AVWD+ WHPVGH+L SG ND T KFW RNR GD MG
Sbjct:  334 MRCAEPLASIPHAH-ASAVWDIDWHPVGHMLVSGSNDQTTKFWTRNRPGDGMG 385          
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A448ZNW4_9STRA (KH domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZNW4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.240e-15
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0
Query:    3 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEVSE 60
            SE+P A + YAHD  A+WDL WHP GH+LASG ND   KFW RNR+G + G +  + +
Sbjct:  358 SEEPAARVPYAHD-MAIWDLQWHPAGHMLASGSNDRQTKFWARNRLGSTAGLQDTIDD 414          
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A7S1GQS8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQS8_CYCTE)

HSP 1 Score: 76.6 bits (187), Expect = 7.810e-15
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 0
Query:    3 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEVSE 60
            S+ P A++ YAHD  A+WDL WHP GH+LASG ND   KFW RNR+G + G   E  E
Sbjct:  286 SDDPVAKVPYAHD-MAIWDLQWHPAGHMLASGSNDRQTKFWARNRLGSTSGLPEEEQE 342          
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A0G4IVU1_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IVU1_PLABS)

HSP 1 Score: 76.6 bits (187), Expect = 8.700e-15
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0
Query:    4 EKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEVSEV 61
            + P AEI   HDG+ VWD+ WHP+GHVLA+G ND TV+FW RNR GD M  K  V+++
Sbjct:  394 DAPQAEIAGGHDGS-VWDMDWHPLGHVLATGSNDQTVRFWTRNRPGDEMKDKYNVNQL 450          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW8_ECTSI5.760e-3291.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUK6_9PHAE1.060e-3191.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CIR2_9STRA4.150e-2066.07WD40-repeat-containing domain protein (Fragment) n... [more]
D2VL90_NAEGR9.630e-1657.63Guanine nucleotide-binding protein subunit beta-li... [more]
A0A2P2I5D5_9CRUS4.370e-1562.00Pre-mRNA 3' end processing protein WDR33-like (Fra... [more]
T1K3C5_TETUR4.680e-1562.26Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
A0A1X6NUY8_PORUM5.660e-1560.38Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A448ZNW4_9STRA6.240e-1553.45KH domain-containing protein n=2 Tax=Pseudo-nitzsc... [more]
A0A7S1GQS8_CYCTE7.810e-1555.17Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A0G4IVU1_PLABS8.700e-1556.90Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 3..44
e-value: 5.5E-6
score: 35.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 12..43
score: 10.107
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..65
e-value: 4.1E-8
score: 34.5
NoneNo IPR availablePANTHERPTHR22836WD40 REPEAT PROTEINcoord: 3..53
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 12..43
score: 8.518
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 14..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18187contigL-elsbetiae_contig18187:2795..2992 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18187.5243.1mRNA_L-elsbetiae_contig18187.5243.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18187 2795..2992 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18187.5243.1 ID=prot_L-elsbetiae_contig18187.5243.1|Name=mRNA_L-elsbetiae_contig18187.5243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
LRSEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGD
SMGCKPEVSEVTCVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf