mRNA_L-elsbetiae_contig18187.5243.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18187.5243.1
Unique NamemRNA_L-elsbetiae_contig18187.5243.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: D8LKW8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW8_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.760e-32
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    7 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEVSE 180
            SEKP+AEIEYAHDGTAVWDLGWHPVGHVLASG NDHTVKFWVRNRVGD+MGCKPE++E
Sbjct:  324 SEKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPELNE 381
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BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A6H5JUK6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.060e-31
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 LRSEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEV 174
            + SEKP+AEIEYAHDGTAVWDLGWHPVGHVLASG NDHTVKFWVRNRVGD+MGCKPEV
Sbjct:  168 IGSEKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPEV 225
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BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A836CIR2_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.150e-20
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    7 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEV 174
            +E+P A I  AHD TAVWD+ WHP+GHV+A+G NDHTVKFW RNR GD +G +PEV
Sbjct:  324 NEQPEAVIPQAHDDTAVWDISWHPLGHVVATGSNDHTVKFWARNRPGDPLGVEPEV 379
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BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: D2VL90_NAEGR (Guanine nucleotide-binding protein subunit beta-like protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VL90_NAEGR)

HSP 1 Score: 79.3 bits (194), Expect = 9.630e-16
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    7 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEVSEV 183
            +E P A+I+ AH  +AVWD+ WHP GH+L SG NDH+ KFWVRNR GD M  K  V E+
Sbjct:  421 NESPQAKIKEAHS-SAVWDIAWHPFGHILCSGSNDHSTKFWVRNRPGDKMDDKYNVHEL 478
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BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A2P2I5D5_9CRUS (Pre-mRNA 3' end processing protein WDR33-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I5D5_9CRUS)

HSP 1 Score: 77.4 bits (189), Expect = 4.370e-15
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    7 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSM 156
            ++K    I+ AHDG  +WDL WHP+GH+LASG NDHT KFW RNR GD M
Sbjct:  121 NDKEVGNIDAAHDGI-IWDLAWHPLGHILASGSNDHTTKFWTRNRPGDKM 169
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BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: T1K3C5_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1K3C5_TETUR)

HSP 1 Score: 77.4 bits (189), Expect = 4.680e-15
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    7 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCK 165
            +EK    +E AHD + VW L WHP+GH+LASG NDHT KFW RNR GD MG K
Sbjct:  348 TEKEVGGMELAHD-SVVWSLSWHPLGHILASGSNDHTCKFWTRNRPGDRMGDK 399
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BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A1X6NUY8_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUY8_PORUM)

HSP 1 Score: 77.0 bits (188), Expect = 5.660e-15
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 LRSEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMG 159
            +R  +P A I +AH  +AVWD+ WHPVGH+L SG ND T KFW RNR GD MG
Sbjct:  334 MRCAEPLASIPHAH-ASAVWDIDWHPVGHMLVSGSNDQTTKFWTRNRPGDGMG 385
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BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A448ZNW4_9STRA (KH domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZNW4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.240e-15
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    7 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEVSE 180
            SE+P A + YAHD  A+WDL WHP GH+LASG ND   KFW RNR+G + G +  + +
Sbjct:  358 SEEPAARVPYAHD-MAIWDLQWHPAGHMLASGSNDRQTKFWARNRLGSTAGLQDTIDD 414
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BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A7S1GQS8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQS8_CYCTE)

HSP 1 Score: 76.6 bits (187), Expect = 7.810e-15
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    7 SEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEVSE 180
            S+ P A++ YAHD  A+WDL WHP GH+LASG ND   KFW RNR+G + G   E  E
Sbjct:  286 SDDPVAKVPYAHD-MAIWDLQWHPAGHMLASGSNDRQTKFWARNRLGSTSGLPEEEQE 342
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BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Match: A0A0G4IVU1_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IVU1_PLABS)

HSP 1 Score: 76.6 bits (187), Expect = 8.700e-15
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   10 EKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGDSMGCKPEVSEV 183
            + P AEI   HDG+ VWD+ WHP+GHVLA+G ND TV+FW RNR GD M  K  V+++
Sbjct:  394 DAPQAEIAGGHDGS-VWDMDWHPLGHVLATGSNDQTVRFWTRNRPGDEMKDKYNVNQL 450
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18187.5243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW8_ECTSI5.760e-3291.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUK6_9PHAE1.060e-3191.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CIR2_9STRA4.150e-2066.07WD40-repeat-containing domain protein (Fragment) n... [more]
D2VL90_NAEGR9.630e-1657.63Guanine nucleotide-binding protein subunit beta-li... [more]
A0A2P2I5D5_9CRUS4.370e-1562.00Pre-mRNA 3' end processing protein WDR33-like (Fra... [more]
T1K3C5_TETUR4.680e-1562.26Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
A0A1X6NUY8_PORUM5.660e-1560.38Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A448ZNW4_9STRA6.240e-1553.45KH domain-containing protein n=2 Tax=Pseudo-nitzsc... [more]
A0A7S1GQS8_CYCTE7.810e-1555.17Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A0G4IVU1_PLABS8.700e-1556.90Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18187contigL-elsbetiae_contig18187:2795..2992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog2880.D8LKW8
Preferred nameWDR33
KEGG koko:K15542
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005847,GO:0005849,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019438,GO:0019953,GO:0022414,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045184,GO:0046483,GO:0046907,GO:0048232,GO:0048609,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG2319@1,KOG0284@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815757.552233-CDS-L-elsbetiae_contig18187:2794..29921622815757.552233-CDS-L-elsbetiae_contig18187:2794..2992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18187 2795..2992 -
1691683083.0703015-CDS-L-elsbetiae_contig18187:2794..29921691683083.0703015-CDS-L-elsbetiae_contig18187:2794..2992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18187 2795..2992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18187.5243.1prot_L-elsbetiae_contig18187.5243.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18187 2795..2992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18187.5243.1

>prot_L-elsbetiae_contig18187.5243.1 ID=prot_L-elsbetiae_contig18187.5243.1|Name=mRNA_L-elsbetiae_contig18187.5243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
LRSEKPYAEIEYAHDGTAVWDLGWHPVGHVLASGGNDHTVKFWVRNRVGD
SMGCKPEVSEVTCVT*
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mRNA from alignment at L-elsbetiae_contig18187:2795..2992-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18187.5243.1 ID=mRNA_L-elsbetiae_contig18187.5243.1|Name=mRNA_L-elsbetiae_contig18187.5243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=198bp|location=Sequence derived from alignment at L-elsbetiae_contig18187:2795..2992- (Laminarionema elsbetiae ELsaHSoW15)
CTCAGGTCGGAGAAGCCGTACGCGGAGATCGAGTACGCCCACGACGGCAC
GGCCGTCTGGGACCTCGGTTGGCATCCCGTGGGGCACGTGCTGGCGTCCG
GTGGCAACGACCACACCGTCAAGTTCTGGGTCCGAAACAGAGTGGGGGAC
TCGATGGGCTGCAAGCCGGAGGTGAGTGAGGTAACATGTGTAACTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18187:2795..2992-

>mRNA_L-elsbetiae_contig18187.5243.1 ID=mRNA_L-elsbetiae_contig18187.5243.1|Name=mRNA_L-elsbetiae_contig18187.5243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig18187:2795..2992- (Laminarionema elsbetiae ELsaHSoW15)
CTCAGGTCGGAGAAGCCGTACGCGGAGATCGAGTACGCCCACGACGGCAC
GGCCGTCTGGGACCTCGGTTGGCATCCCGTGGGGCACGTGCTGGCGTCCG
GTGGCAACGACCACACCGTCAAGTTCTGGGTCCGAAACAGAGTGGGGGAC
TCGATGGGCTGCAAGCCGGAGGTGAGTGAGGTAACATGTGTAACTTGACT
CAGGTCGGAGAAGCCGTACGCGGAGATCGAGTACGCCCACGACGGCACGG
CCGTCTGGGACCTCGGTTGGCATCCCGTGGGGCACGTGCTGGCGTCCGGT
GGCAACGACCACACCGTCAAGTTCTGGGTCCGAAACAGAGTGGGGGACTC
GATGGGCTGCAAGCCGGAGGTGAGTGAGGTAACATGTGTAACTTGA
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