prot_L-elsbetiae_contig18158.5235.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18158.5235.1
Unique Nameprot_L-elsbetiae_contig18158.5235.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length207
Homology
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BLAST of mRNA_L-elsbetiae_contig18158.5235.1 vs. uniprot
Match: A0A6H5K3S5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3S5_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 8.830e-76
Identity = 148/206 (71.84%), Postives = 158/206 (76.70%), Query Frame = 0 
Query:    1 MMRAVETLRQRLPPNVGGTLGYAPVQLSDSEDGDGSGAGGEFEL-GARFGRDVGLQSRDGRRPRRRGSTGGAXXXXXXXXXXXXXXXXQEEEDDMLWPPYTPLYTNMKVLRRKRLDASMMYPRAGPCTKVCFLASLWGVSFLTWVGFTLASGSPYLIAKDSEATNLARSHSVFGAAAMYFVCACLTGYSWYKSSY-LRPLPTMAES 204
            MMRAVETLRQRLPP+    LGYAPV LSDS         GEFE+ G  FG     Q RD RRPRR       XXXXXXXXXXXXXXXX      +LWPPYTPLYTNMKVLRRKRLDASMMY RAGPCTK+CFL SLWG SFLTW+GFTLASGSPY+I +D  ATNLARS SVFGAAAMY VCACLTGYSWYKSS+  RPLPT+ +S
Sbjct:    1 MMRAVETLRQRLPPS----LGYAPVLLSDSXXXXXXXXRGEFEIAGGNFGGGR-HQDRDLRRPRRXXXX---XXXXXXXXXXXXXXXXXXXXXXLLWPPYTPLYTNMKVLRRKRLDASMMYSRAGPCTKICFLTSLWGASFLTWLGFTLASGSPYIIPEDPPATNLARSRSVFGAAAMYLVCACLTGYSWYKSSWGARPLPTLGDS 198
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18158.5235.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3S5_9PHAE8.830e-7671.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 150..168
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 191..206
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 129..149
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 169..190
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..128
NoneNo IPR availableTMHMMTMhelixcoord: 129..151
NoneNo IPR availableTMHMMTMhelixcoord: 171..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18158contigL-elsbetiae_contig18158:1156..2813 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18158.5235.1mRNA_L-elsbetiae_contig18158.5235.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18158 1156..2813 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18158.5235.1 ID=prot_L-elsbetiae_contig18158.5235.1|Name=mRNA_L-elsbetiae_contig18158.5235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MMRAVETLRQRLPPNVGGTLGYAPVQLSDSEDGDGSGAGGEFELGARFGR
DVGLQSRDGRRPRRRGSTGGAGRGAGAGEGTGGAGGGQEEEDDMLWPPYT
PLYTNMKVLRRKRLDASMMYPRAGPCTKVCFLASLWGVSFLTWVGFTLAS
GSPYLIAKDSEATNLARSHSVFGAAAMYFVCACLTGYSWYKSSYLRPLPT
MAESLP*
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