mRNA_L-elsbetiae_contig18158.5235.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig18158.5235.1
Unique NamemRNA_L-elsbetiae_contig18158.5235.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig18158.5235.1 vs. uniprot
Match: A0A6H5K3S5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3S5_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 8.830e-76
Identity = 148/206 (71.84%), Postives = 158/206 (76.70%), Query Frame = 1 
Query:    1 MMRAVETLRQRLPPNVGGTLGYAPVQLSDSEDGDGSGAGGEFEL-GARFGRDVGLQSRDGRRPRRRGSTGGAXXXXXXXXXXXXXXXXQEEEDDMLWPPYTPLYTNMKVLRRKRLDASMMYPRAGPCTKVCFLASLWGVSFLTWVGFTLASGSPYLIAKDSEATNLARSHSVFGAAAMYFVCACLTGYSWYKSSY-LRPLPTMAES 612
            MMRAVETLRQRLPP+    LGYAPV LSDS         GEFE+ G  FG     Q RD RRPRR       XXXXXXXXXXXXXXXX      +LWPPYTPLYTNMKVLRRKRLDASMMY RAGPCTK+CFL SLWG SFLTW+GFTLASGSPY+I +D  ATNLARS SVFGAAAMY VCACLTGYSWYKSS+  RPLPT+ +S
Sbjct:    1 MMRAVETLRQRLPPS----LGYAPVLLSDSXXXXXXXXRGEFEIAGGNFGGGR-HQDRDLRRPRRXXXX---XXXXXXXXXXXXXXXXXXXXXXLLWPPYTPLYTNMKVLRRKRLDASMMYSRAGPCTKICFLTSLWGASFLTWLGFTLASGSPYIIPEDPPATNLARSRSVFGAAAMYLVCACLTGYSWYKSSWGARPLPTLGDS 198
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18158.5235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3S5_9PHAE8.830e-7671.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18158contigL-elsbetiae_contig18158:1156..2813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002760.1
Exons2
Model size621
Cds size621
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.9264793-CDS-L-elsbetiae_contig18158:1155..15311622815756.9264793-CDS-L-elsbetiae_contig18158:1155..1531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18158 1156..1531 +
1691683082.7264066-CDS-L-elsbetiae_contig18158:1155..15311691683082.7264066-CDS-L-elsbetiae_contig18158:1155..1531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18158 1156..1531 +
1622815756.94303-CDS-L-elsbetiae_contig18158:2568..28131622815756.94303-CDS-L-elsbetiae_contig18158:2568..2813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18158 2569..2813 +
1691683082.7370272-CDS-L-elsbetiae_contig18158:2568..28131691683082.7370272-CDS-L-elsbetiae_contig18158:2568..2813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig18158 2569..2813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18158.5235.1prot_L-elsbetiae_contig18158.5235.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig18158 1156..2813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig18158.5235.1

>prot_L-elsbetiae_contig18158.5235.1 ID=prot_L-elsbetiae_contig18158.5235.1|Name=mRNA_L-elsbetiae_contig18158.5235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MMRAVETLRQRLPPNVGGTLGYAPVQLSDSEDGDGSGAGGEFELGARFGR
DVGLQSRDGRRPRRRGSTGGAGRGAGAGEGTGGAGGGQEEEDDMLWPPYT
PLYTNMKVLRRKRLDASMMYPRAGPCTKVCFLASLWGVSFLTWVGFTLAS
GSPYLIAKDSEATNLARSHSVFGAAAMYFVCACLTGYSWYKSSYLRPLPT
MAESLP*
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mRNA from alignment at L-elsbetiae_contig18158:1156..2813+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig18158.5235.1 ID=mRNA_L-elsbetiae_contig18158.5235.1|Name=mRNA_L-elsbetiae_contig18158.5235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1658bp|location=Sequence derived from alignment at L-elsbetiae_contig18158:1156..2813+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAGAGCCGTCGAAACGCTACGGCAGAGGCTCCCCCCCAACGTCGG
GGGCACGCTGGGGTACGCGCCGGTGCAACTCTCTGACAGCGAGGACGGCG
ACGGGTCGGGGGCAGGGGGAGAGTTCGAACTTGGCGCGAGGTTCGGTCGC
GACGTCGGGCTCCAGAGCCGCGACGGCCGAAGGCCGCGGCGAAGAGGAAG
CACCGGGGGCGCCGGGAGGGGGGCGGGGGCGGGGGAGGGGACGGGGGGCG
CCGGGGGGGGGCAAGAGGAGGAGGACGACATGCTGTGGCCGCCGTACACG
CCGCTTTACACCAACATGAAGGTCTTGAGACGAAAACGGCTGGACGCTTC
AATGATGTACCCCCGAGCTGGGCCGTGTGAGTGCTCTATGAATAGTAACT
AATGATTTAGACGCACAGAGCGGATGCAGAGAAAGAAGCGTGTCGAACGT
TTGGGCGTGGGACGTGGTTTGGGCGGGGTGTGTTTCTAAATAATATTTAT
GGATAAGAGCTTGTTGGTGTTGTTGCTGCTGCCGCTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTCTTCACACAGTAAAAACCGTTCCGAT
CGATCTCTCTATCCAGTGCCTCCATGAGTCCGCACTAAACCAACACATGA
CGCGGTTCGATTCCCGTGGTTACAGGATAACTTACCACCTATGAAGGATG
TACTGGAAAATTAAAAAAATACTTGGGTATAGGTAAAACAATTCCCTTTT
GTCTTTTCGCTTTTTCTAGCCTCGGGTATCGCTCCCCGGTCAGTCCGAAA
CGGGCGTACCCCACATCCCAGCAGTGCGTCCTGTGTGTGTGTGTGACGGT
TGCTCGGTGCACACTTTCTCAAAGGCTGGCCAGCCGGCCTGGCTGTCCGA
CTACAGGCGTTGTCGCTACCATGTTGTCGTTGTTACGTTTCGTGCAGTAA
AGATTGTCCCAATGCCGCTCGATGTTGTCGTCATAATCACCGGCTTTCGC
GTCCGTCCCTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAACAACA
CACACAAACCATCCCACCTACCCCCCCCCCCACACCACACACACCACAAC
CCCCCCCNNNNNNNNNNTGAGTGAAACGTTTTGCCACCGCCCCCTGCGCT
TGTCGCTAGCACAACCGCCGTTCGCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCAAACAGCAAAAATCAACCAGTACAAACCAGTTACGCTTGACTCAC
CCAACAAACAACAAAGCCTAGGCTTTCACTCCGTCGCCCTCGCTCGCTGA
CAGCAACATGCACCACACCAACGACAGGCAAACAACCCCCGCCGCTCACA
AGCACACACCTCGCCCGTCCTTCCGCCCGTGCACACTATGTATATATATA
ATATATTTCACAGGCACGAAAGTGTGCTTCTTGGCGTCGCTGTGGGGCGT
TTCTTTCTTGACGTGGGTCGGCTTTACCCTCGCGAGCGGGTCGCCGTACC
TGATCGCGAAGGACAGCGAGGCCACGAACCTGGCCCGATCGCACTCCGTT
TTCGGCGCGGCCGCCATGTACTTCGTCTGCGCCTGCCTGACCGGCTACTC
TTGGTACAAGTCGTCGTACTTGAGACCGCTGCCAACGATGGCCGAGAGCT
TGCCGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig18158:1156..2813+

>mRNA_L-elsbetiae_contig18158.5235.1 ID=mRNA_L-elsbetiae_contig18158.5235.1|Name=mRNA_L-elsbetiae_contig18158.5235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig18158:1156..2813+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAGAGCCGTCGAAACGCTACGGCAGAGGCTCCCCCCCAACGTCGG
GGGCACGCTGGGGTACGCGCCGGTGCAACTCTCTGACAGCGAGGACGGCG
ACGGGTCGGGGGCAGGGGGAGAGTTCGAACTTGGCGCGAGGTTCGGTCGC
GACGTCGGGCTCCAGAGCCGCGACGGCCGAAGGCCGCGGCGAAGAGGAAG
CACCGGGGGCGCCGGGAGGGGGGCGGGGGCGGGGGAGGGGACGGGGGGCG
CCGGGGGGGGGCAAGAGGAGGAGGACGACATGCTGTGGCCGCCGTACACG
CCGCTTTACACCAACATGAAGGTCTTGAGACGAAAACGGCTGGACGCTTC
AATGATGTACCCCCGAGCTGGGCCGTATGATGAGAGCCGTCGAAACGCTA
CGGCAGAGGCTCCCCCCCAACGTCGGGGGCACGCTGGGGTACGCGCCGGT
GCAACTCTCTGACAGCGAGGACGGCGACGGGTCGGGGGCAGGGGGAGAGT
TCGAACTTGGCGCGAGGTTCGGTCGCGACGTCGGGCTCCAGAGCCGCGAC
GGCCGAAGGCCGCGGCGAAGAGGAAGCACCGGGGGCGCCGGGAGGGGGGC
GGGGGCGGGGGAGGGGACGGGGGGCGCCGGGGGGGGGCAAGAGGAGGAGG
ACGACATGCTGTGGCCGCCGTACACGCCGCTTTACACCAACATGAAGGTC
TTGAGACGAAAACGGCTGGACGCTTCAATGATGTACCCCCGAGCTGGGCC
GTGCACGAAAGTGTGCTTCTTGGCGTCGCTGTGGGGCGTTTCTTTCTTGA
CGTGGGTCGGCTTTACCCTCGCGAGCGGGTCGCCGTACCTGATCGCGAAG
GACAGCGAGGCCACGAACCTGGCCCGATCGCACTCCGTTTTCGGCGCGGC
CGCCATGTACTTCGTCTGCGCCTGCCTGACCGGCTACTCTTGGTACAAGT
CGTCGTACTTGAGACCGCTGCCAACGATGGCCGAGAGCTTGCCGTAAGCA
CGAAAGTGTGCTTCTTGGCGTCGCTGTGGGGCGTTTCTTTCTTGACGTGG
GTCGGCTTTACCCTCGCGAGCGGGTCGCCGTACCTGATCGCGAAGGACAG
CGAGGCCACGAACCTGGCCCGATCGCACTCCGTTTTCGGCGCGGCCGCCA
TGTACTTCGTCTGCGCCTGCCTGACCGGCTACTCTTGGTACAAGTCGTCG
TACTTGAGACCGCTGCCAACGATGGCCGAGAGCTTGCCGTAA
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