Homology
BLAST of mRNA_L-elsbetiae_contig17923.5123.1 vs. uniprot
Match:
D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI)
HSP 1 Score: 288 bits (736), Expect = 6.880e-85
Identity = 234/324 (72.22%), Postives = 251/324 (77.47%), Query Frame = 1
Query: 22 SLVVDHLASNGLLQSLAVFLPESGLG------------TDAGASVAA-AALSREDVLQALSLPADSALFRRVISRAAE-EG--------ADGRAA--PGAGAGATVVLTASAAVLPAEXXXXXXXXXXXXXXXXXXXXXXXXXKRVCGLLEALVGEVAARSRAVAVDCNTQTEEAGRSHKENLVSRLEAVRETWLKRSADERREPAQDVTERMLAYQRECESRAATQAKL---------AERETFRERDLAALRLQMTSAQRREVDATRKELQSQYDARVERLRESEREXXXXXXXXXXXXXVXXXXXXQSLLREMDLLRTREQ 894
SLVVDHLASNGLLQSLAVFLPESGLG T GA+ AA AALSREDVLQAL +PADS LFRRVI RA E EG +DG A PGA AGA + ++A+V XXXXXXXXXXXXXXXXXXXX KRVCGLLEALVGEVA RSRAVAVD NTQT+EAGRSHKENLV+RLEAVRETWL+RSADERREPAQDVTERMLAYQRECESRAA QA AER++FRERDLAALR+QM S +RREVDA RKELQSQYDARVERL+E+ER+ XXXXXXXXXXX XXXXXX MDLLRTREQ
Sbjct: 120 SLVVDHLASNGLLQSLAVFLPESGLGGGSNCGNTATVGTGPGAAPAAEAALSREDVLQALPIPADSNLFRRVIRRAEEGEGKAAGSVCRSDGETAAVPGAAAGADTAVVSNASVA---VXXXXXXXXXXXXXXXXXXXXSREQKRVCGLLEALVGEVATRSRAVAVDSNTQTDEAGRSHKENLVTRLEAVRETWLRRSADERREPAQDVTERMLAYQRECESRAAAQASCWVAPRLLIKAERDSFRERDLAALRVQMASTRRREVDAMRKELQSQYDARVERLQETERDREXXXXXXXXXXXXXXXXXXXXXXXXMDLLRTREQ 440
BLAST of mRNA_L-elsbetiae_contig17923.5123.1 vs. uniprot
Match:
A0A6H5KME2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KME2_9PHAE)
HSP 1 Score: 142 bits (359), Expect = 5.230e-37
Identity = 109/237 (45.99%), Postives = 133/237 (56.12%), Query Frame = -1
Query: 7 CLSCCPRLALPLVGKHPLRHVLGRLPPLVRRPLQPCLPNRFQTRHQILLVAASSLLRLRVAVDRDRARPGRHFAHQRLQQAADTLXXXXXXXXXXXXXXXXXXXXXPSSCFCGQHRRRRGQDHS--SASPRPR-----------RSPAIRPLLRRPADHAPEQRRVRRQRQRLQHVLSG*RRGSDRGASVGA---------------EARLRQENREGLQQAVAGEVVHHQADKTRD 633
CL CCPRLALPLVG+H LRH+L R+ P VR QP L +RFQT ILLVAA L+RL V V+ D ARPG H A + L+QAADT+ P+SC +HRRRR + H S S RPR R+ + L RP DHA E+ + R RQRLQHV S RR S R + + EARLRQE+ + LQQAVAGE+VHH+AD+ R+
Sbjct: 63 CLRCCPRLALPLVGQHALRHILRRVAPFVRGAPQPRLSHRFQT---ILLVAAPRLVRLCVGVNHDSARPGGHLADKCLEQAADTVSLTRTPPAADSGCCSSVT---PASC--SRHRRRRVRHHGRISTSHRPRHRRCFSVAAARRARVVALALFRPPDHASEEGGIDRYRQRLQHVFSRERRLSRRSGTRASADGSRDAAXXXXXXXEARLRQEDCQRLQQAVAGEMVHHKADEFRE 291
BLAST of mRNA_L-elsbetiae_contig17923.5123.1 vs. uniprot
Match:
A0A7S1U379_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U379_9STRA)
HSP 1 Score: 62.8 bits (151), Expect = 2.370e-7
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 1
Query: 457 TQTEEAGRSHKENLVSRLEAVRETWLKRSADERREPAQDVTERMLAYQRECESRAATQAKLAERETFRERDLAALRLQMTSAQRREVDATRKELQSQYDARVERLRESEREXXXXXXXXXXXXXVXXXXXXQSLLREMDLLRTRE 891
TQTE + ++ L ++LE + + SA E Q + +RM +QRE RAA + AE++ F E +L+ RL+ QRREVD R+ELQ+ YD R++ L + E Q+LL E++ LR RE
Sbjct: 64 TQTETTAWNARDALTAQLEHLEARFASTSARLLSEDGQGIEQRMATFQREVVERAARDLE-AEKQRFVETELSRARLEFQQLQRREVDTLRRELQADYDRRLQELHARDAERALRAEASARNIEASQHDARQNLLFEIERLRNRE 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17923.5123.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 6.88e-85 / Id = 72.22 Expect = 5.23e-37 / Id = 45.99 Expect = 2.37e-7 / Id = 33.79 Sequence D8LGY8_ECTSI A0A6H5KME2_9PHAE A0A7S1U379_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 3
Model size 894
Cds size 894
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815747.2746978-CDS-L-elsbetiae_contig17923:55..554 1622815747.2746978-CDS-L-elsbetiae_contig17923:55..554 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17923 56..554 +
1691683076.4744654-CDS-L-elsbetiae_contig17923:55..554 1691683076.4744654-CDS-L-elsbetiae_contig17923:55..554 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17923 56..554 +
1622815747.28804-CDS-L-elsbetiae_contig17923:1744..1884 1622815747.28804-CDS-L-elsbetiae_contig17923:1744..1884 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17923 1745..1884 +
1691683076.485861-CDS-L-elsbetiae_contig17923:1744..1884 1691683076.485861-CDS-L-elsbetiae_contig17923:1744..1884 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17923 1745..1884 +
1622815747.2984235-CDS-L-elsbetiae_contig17923:2511..2766 1622815747.2984235-CDS-L-elsbetiae_contig17923:2511..2766 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17923 2512..2766 +
1691683076.5035553-CDS-L-elsbetiae_contig17923:2511..2766 1691683076.5035553-CDS-L-elsbetiae_contig17923:2511..2766 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17923 2512..2766 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17923.5123.1
>prot_L-elsbetiae_contig17923.5123.1 ID=prot_L-elsbetiae_contig17923.5123.1|Name=mRNA_L-elsbetiae_contig17923.5123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
MNVACFVSLVVDHLASNGLLQSLAVFLPESGLGTDAGASVAAAALSREDV LQALSLPADSALFRRVISRAAEEGADGRAAPGAGAGATVVLTASAAVLPA EAGGGGGGGAATAAGGSSQQQQQQQQKRVCGLLEALVGEVAARSRAVAVD CNTQTEEAGRSHKENLVSRLEAVRETWLKRSADERREPAQDVTERMLAYQ RECESRAATQAKLAERETFRERDLAALRLQMTSAQRREVDATRKELQSQY DARVERLRESERERERRDKERLRDAEVSQFEARQSLLREMDLLRTREQ back to top mRNA from alignment at L-elsbetiae_contig17923:56..2766+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17923.5123.1 ID=mRNA_L-elsbetiae_contig17923.5123.1|Name=mRNA_L-elsbetiae_contig17923.5123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2711bp|location=Sequence derived from alignment at L-elsbetiae_contig17923:56..2766+ (Laminarionema elsbetiae ELsaHSoW15)ATGAACGTCGCGTGTTTTGTCAGCCTGGTGGTGGACCACCTCGCCAGCAA
CGGCCTGCTGCAGTCCCTCGCGGTTTTCCTGCCGGAGTCTGGCCTCGGCA
CCGACGCTGGCGCCTCTGTCGCTGCCGCGGCGCTATCCCGAGAGGACGTG
CTGCAGGCGCTGTCGCTGCCGGCGGACTCGGCGCTGTTCCGGCGCGTGAT
CAGCCGGGCGGCGGAGGAGGGGGCGGATGGCCGGGCTGCGCCGGGGGCGG
GGGCTGGCGCTACTGTGGTCTTGACCGCGTCGGCGGCGGTGCTGCCCGCA
GAAGCAGGAGGAGGGGGAGGAGGGGGAGCGGCGACGGCGGCAGGCGGCAG
CTCGCAGCAGCAGCAGCAGCAGCAGCAGAAGCGTGTCTGCGGCCTGCTGG
AGGCGCTGGTGGGCGAAGTGGCGGCCAGGTCTCGCGCGGTCGCGGTCGAC
TGCAACACGCAGACGGAGGAGGCTGGACGCAGCCACAAGGAGAATTTGG G
TGAGGGGGCAGCTGGGTGGGTGAGATGGTCACGAAACTGTCTCTTCTTCG
CGTCTTGTATCGGCTTTCGTGGTATTGTAGGGGTGCTGGGAGGAAGGAAA
ACACCTCTGAGCTTCCTCTCGAACCCCCAATACCTTCCCGGGCAAGCGCC
TCCCTCCATTTGTCGTGCCGACCAGGGGTTCGTTGCGGCTCCGACTCTGC
GGTTGTGTTCTCGCTCTCAGCTGCAGATCACTTAATGTAAGTATGGCATA
CGGTATACCCAGATACAGGGTTCGCGACCCAGCTACTGCTGTTCATGTGC
CGCCAAAAATACCCATTTTCAACGATATTTTTCGCCCCCCCCTGGATCTT
ATCTCATGGTATTTCGCCGGAGCCCCAGTGCACGCACAAGCCTATGTAGC
CACCTTATGTAGACCGGTTTTTGGGAGCACAAAGTTTATTTTGAGAAAAG
TTGCCATTTTCGTATTGTTGGGCACTTTCATCGCCAAGAGCTCAGAATCG
TGCCTGCGCGCACCTCGAGAACAATTGAAGCTCTCGTCCAGAGGTTTCTA
GATCTACTGCCCATTCTGGTAGACTTCACGTTTGATTTTTCGTCGAGGAG
CAAGATATGGCAACACTGTGCCAACGTTGCAACAAAAAATAGCCCTTTCG
TGAAAAAAATTGCAAACTTTTCGCCCGAAAATGCTTTTCTGGCGAAAACC
TGTCAAAATGTTGCCTCTCTTGCTCCTCGACGAAAAATCAAACTTGAAGC
CTGCCAGAATGGGCAGTAGACCTAGAAACCTCTGGACGAGAGCTTCAACT
GTTCTCGAGGTACGCAGGCACGATTCCGAGCTCTTGGCGACGAAAAGTGC
CCAACAATACGAAAAAAGCAACTTTTCTCAATATAAACTTTGTGCTCCCA
TAAAAACCGGTGTTATAAGTCTATCGTTTTTTTTTATGCCGCGAGGGTGG
GTCAAAGTAGGCAGGCGGTCGACCGTGCTCAGCCATCAACCTGCACCTCA
TTCTGTGTGACCACGGCGGTTCCGCACTCTGGCAAGATGCCCTCGTGGCA
CAGCAGGGAGCCCATCGAGCACTGGAAATAAATGTGAAGAAAGAAAGAAA
CCGAAAAAGAAGAAAAAAATCGAGCCCCGTTTGTTGCCCCCCCCCTCCCC
TCCTCCTCCCCTTTGTTGCCCCTCGGATGCTCGCTTCAGTGTCTCGTCTG
GAAGCGGTTCGGGAGACATGGCTGAAGCGGTCTGCGGACGAGCGGCGGGA
GCCGGCCCAGGACGTGACGGAGCGGATGCTTGCCTACCAGCGGGAGTGCG
AGTCGCGGGCAGCAACTCAGGCAAAGCTT GTTTTTTAATGTTTTAATACT
CCTGTCTACTACTTCCGAAGTAATCGTGCGTACATACAGATGCAAGTAGT
GCTTGTATTTTCGACGAAATGAAACGTCAGCGGCCTGTTTTATTGCACAC
ACGTTCGCCCTGTGGAAAGTTGCTGGCGTTGCACGCTTATTTTGTTGTTT
GTGTGTTTGTGTGTGTGCGTGTGTGTGCGTGTGTGTGCGTGTGTTGTTGT
TCGTGTGTTTGTATGTGTGTGTGTGTGTGTTTGTGTGTGTGTTTGTTTGT
TTGTTTGTTTGTTTGTGTGTGTGTGTGTGGTGAGACGAAACGCGTTCGAA
GATGAAACGGATGGCTCTGTTTCTCATCCGTAAATGTCGCGACCGAGAGG
GAGGGCGGCTCATTCGTCCAGGCCCCAGGAAGACCGAAAACCGGCATCAT
TTTTTTTTTTTGCAAAGACGGGGCGGTGGTGGTGGTTCCGATGTTTTATG
TACCGCTGCCGCAGCAACAGCAGTGCTAGCTAACAAACACGGCGAGCTTA
AGTGATTTCACGTGCACTTGCTGGCTGTTTTCCCGCCCCTTTCTCCCACT
CTGCCCGCCCCATCCACCCACCCACCGCGGGCCCCCTGGGGGCCCCGCAG
GTGAAGGCGGAACGGGAGACCTTCCGGGAGCGCGACCTCGCCGCGCTTCG
GCTGCAGATGACCTCGGCGCAGCGGCGAGAGGTGGACGCCACGAGGAAGG
AGCTGCAGTCGCAGTACGACGCGCGCGTGGAGAGGCTGCGGGAGTCGGAG
AGGGAGAGGGAGAGGCGTGACAAGGAACGCCTCCGGGATGCCGAGGTGTC
TCAGTTCGAGGCCAGGCAGAGCCTGCTCAGGGAGATGGACCTCCTCAGGA
CGCGCGAGCAA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17923:56..2766+
>mRNA_L-elsbetiae_contig17923.5123.1 ID=mRNA_L-elsbetiae_contig17923.5123.1|Name=mRNA_L-elsbetiae_contig17923.5123.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig17923:56..2766+ (Laminarionema elsbetiae ELsaHSoW15) ATGAACGTCGCGTGTTTTGTCAGCCTGGTGGTGGACCACCTCGCCAGCAA CGGCCTGCTGCAGTCCCTCGCGGTTTTCCTGCCGGAGTCTGGCCTCGGCA CCGACGCTGGCGCCTCTGTCGCTGCCGCGGCGCTATCCCGAGAGGACGTG CTGCAGGCGCTGTCGCTGCCGGCGGACTCGGCGCTGTTCCGGCGCGTGAT CAGCCGGGCGGCGGAGGAGGGGGCGGATGGCCGGGCTGCGCCGGGGGCGG GGGCTGGCGCTACTGTGGTCTTGACCGCGTCGGCGGCGGTGCTGCCCGCA GAAGCAGGAGGAGGGGGAGGAGGGGGAGCGGCGACGGCGGCAGGCGGCAG CTCGCAGCAGCAGCAGCAGCAGCAGCAGAAGCGTGTCTGCGGCCTGCTGG AGGCGCTGGTGGGCGAAGTGGCGGCCAGGTCTCGCGCGGTCGCGGTCGAC TGCAACACGCAGACGGAGGAGGCTGGACGCAGCCACAAGGAGAATTTGGA TGAACGTCGCGTGTTTTGTCAGCCTGGTGGTGGACCACCTCGCCAGCAAC GGCCTGCTGCAGTCCCTCGCGGTTTTCCTGCCGGAGTCTGGCCTCGGCAC CGACGCTGGCGCCTCTGTCGCTGCCGCGGCGCTATCCCGAGAGGACGTGC TGCAGGCGCTGTCGCTGCCGGCGGACTCGGCGCTGTTCCGGCGCGTGATC AGCCGGGCGGCGGAGGAGGGGGCGGATGGCCGGGCTGCGCCGGGGGCGGG GGCTGGCGCTACTGTGGTCTTGACCGCGTCGGCGGCGGTGCTGCCCGCAG AAGCAGGAGGAGGGGGAGGAGGGGGAGCGGCGACGGCGGCAGGCGGCAGC TCGCAGCAGCAGCAGCAGCAGCAGCAGAAGCGTGTCTGCGGCCTGCTGGA GGCGCTGGTGGGCGAAGTGGCGGCCAGGTCTCGCGCGGTCGCGGTCGACT GCAACACGCAGACGGAGGAGGCTGGACGCAGCCACAAGGAGAATTTGGTG TCTCGTCTGGAAGCGGTTCGGGAGACATGGCTGAAGCGGTCTGCGGACGA GCGGCGGGAGCCGGCCCAGGACGTGACGGAGCGGATGCTTGCCTACCAGC GGGAGTGCGAGTCGCGGGCAGCAACTCAGGCAAAGCTTTGTCTCGTCTGG AAGCGGTTCGGGAGACATGGCTGAAGCGGTCTGCGGACGAGCGGCGGGAG CCGGCCCAGGACGTGACGGAGCGGATGCTTGCCTACCAGCGGGAGTGCGA GTCGCGGGCAGCAACTCAGGCAAAGCTTGCGGAACGGGAGACCTTCCGGG AGCGCGACCTCGCCGCGCTTCGGCTGCAGATGACCTCGGCGCAGCGGCGA GAGGTGGACGCCACGAGGAAGGAGCTGCAGTCGCAGTACGACGCGCGCGT GGAGAGGCTGCGGGAGTCGGAGAGGGAGAGGGAGAGGCGTGACAAGGAAC GCCTCCGGGATGCCGAGGTGTCTCAGTTCGAGGCCAGGCAGAGCCTGCTC AGGGAGATGGACCTCCTCAGGACGCGCGAGCAAGCGGAACGGGAGACCTT CCGGGAGCGCGACCTCGCCGCGCTTCGGCTGCAGATGACCTCGGCGCAGC GGCGAGAGGTGGACGCCACGAGGAAGGAGCTGCAGTCGCAGTACGACGCG CGCGTGGAGAGGCTGCGGGAGTCGGAGAGGGAGAGGGAGAGGCGTGACAA GGAACGCCTCCGGGATGCCGAGGTGTCTCAGTTCGAGGCCAGGCAGAGCC TGCTCAGGGAGATGGACCTCCTCAGGACGCGCGAGCAA back to top