Homology
BLAST of mRNA_L-elsbetiae_contig17893.5107.1 vs. uniprot
Match:
D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI)
HSP 1 Score: 61.6 bits (148), Expect = 1.330e-8
Identity = 57/113 (50.44%), Postives = 73/113 (64.60%), Query Frame = 3
Query: 36 EQGSSTAGSKQAGILSSVTRAA----LRGRTATLGAFNRSSPSRTDSSSSSPKPPGSSGGKPEGRNLSFGSLSGISSSASSALRGLAAGVGVVGXXXXXXXXXXXXXXTTNSE 362
EQG+ ++G + GI+SSV+RAA LRGR+ATL A + SS+SP PPG+ G+ + FGSLSGISS+A+SALRGLA+GV + G XXXX TTNSE
Sbjct: 16 EQGTPSSGGSK-GIISSVSRAASSVALRGRSATLNALHIGRGQNRTESSASPLPPGNVKGETASGHHPFGSLSGISSTATSALRGLASGVHL-GAGGNGAGXXXXSGSTTNSE 126
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17893.5107.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.33e-8 / Id = 50.44 Sequence D8LTP0_ECTSI
Match Name E-value Identity Description
D8LTP0_ECTSI 1.330e-8 50.44 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 63.2
Seed ortholog evalue 9.3e-08
Seed eggNOG ortholog 2880.D8LTP0
Hectar predicted targeting category other localisation
EggNOG OGs 2CZJM@1,2SAPD@2759
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
Exons 2
Model size 362
Cds size 342
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815745.3983142-UTR-L-elsbetiae_contig17893:474..494 1622815745.3983142-UTR-L-elsbetiae_contig17893:474..494 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig17893 475..494 +
1691683075.14943-UTR-L-elsbetiae_contig17893:474..494 1691683075.14943-UTR-L-elsbetiae_contig17893:474..494 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig17893 475..494 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815745.4132512-CDS-L-elsbetiae_contig17893:494..626 1622815745.4132512-CDS-L-elsbetiae_contig17893:494..626 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17893 495..626 +
1691683075.1607196-CDS-L-elsbetiae_contig17893:494..626 1691683075.1607196-CDS-L-elsbetiae_contig17893:494..626 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17893 495..626 +
1622815745.4251716-CDS-L-elsbetiae_contig17893:2914..3124 1622815745.4251716-CDS-L-elsbetiae_contig17893:2914..3124 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17893 2915..3124 +
1691683075.1726854-CDS-L-elsbetiae_contig17893:2914..3124 1691683075.1726854-CDS-L-elsbetiae_contig17893:2914..3124 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17893 2915..3124 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17893.5107.1
>prot_L-elsbetiae_contig17893.5107.1 ID=prot_L-elsbetiae_contig17893.5107.1|Name=mRNA_L-elsbetiae_contig17893.5107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MATRTEQGSSTAGSKQAGILSSVTRAALRGRTATLGAFNRSSPSRTDSSS SSPKPPGSSGGKPEGRNLSFGSLSGISSSASSALRGLAAGVGVVGLGVGG GGGGGGSGSTTNSE back to top mRNA from alignment at L-elsbetiae_contig17893:475..3124+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17893.5107.1 ID=mRNA_L-elsbetiae_contig17893.5107.1|Name=mRNA_L-elsbetiae_contig17893.5107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2650bp|location=Sequence derived from alignment at L-elsbetiae_contig17893:475..3124+ (Laminarionema elsbetiae ELsaHSoW15)CAGGCTGGGCTGCCAAAACC ATGGCAACCCGCACGGAGCAAGGTTCTTCC
ACCGCTGGTTCTAAACAAGCAGGCATCCTGTCGAGCGTTACCAGAGCTGC
CCTGAGAGGGAGGACGGCGACGCTGGGTGCCTTTAATCGATCATCTCCCA
GC GTGAGTTCCCTGTGCGCTCCGTGCGCGTTCGCTGGACAGAGGGATGAA
AACGTCCACCTCTGTGTTCCTCTTCCCTCAGAAGTTGTTTGTTTTTGGTC
TACTGTCCGTGTTTGGTAGATGCTTTTCGGCAGTGTGCGCGAACGGGCGA
AACGAGAGCCGAGAAGAGTGGTGGAAGATTCGCCGGTACAACGGCATGAT
GCATCTACACAGATAGGTTGCATTCCGAGCAAGACGCTTGCTGGCAGGTA
CTGGTTGCTCGTACATCCCGCAGGCCACCTCAATTTTTCTGTTGGAATGG
TTTGTAAGAACTACTCCTATCTACCCACAGGTGTTGCGTAAATATTTCAA
GAAATATTGGACTACATACCGAAGTATTTTAGGTACAACGAGGAACTCGG
TGTCGATTGTGTGTTGCTTCCACGAAGCCAATTTTAACGATCCCCCCAGG
CACGTGGGAGCGACCGGTGGGTGATAGGTTGATAGGTTACACTTACATAC
ATATGTAACTGCATAGGTTGGTCGATTGCTCCGACAACGAAATACATCGA
AATATATTAGGAGTATTTATAATCGTAGATACATAGACTCCAAATTGTAC
GAATCCCAGAATCGTGTTCGGAGCGGCTCTTCGGACTCCTCTCTCTCCCA
TCCAATAGGACTGCTGGAAAGACGTGAAGGTCTCTTCGTGCCGAGCGATG
TGCAGCATTTCAGCGCGGCGTGCGTGCATACCATGACAGAGAAACGGGCG
TTCGGAGTAAATGATAAAATGAAATTGTATACAGATTTAGGACTACAGAT
TTTGTTTACAAGGGAAGCCTGCTGCAGTAAAAATCTCTCCCGTCGTAAAT
ATAGATAAGCAGTACATACCGGCCGGCTAATATCCAAACCTGAAATCGGG
CTCCGGCGGGCTTTCTTATGTATGTTTGTTGGAAGTCGAGCATGAACACT
TTCTTATGTGATGTATAGGATTTAGTGCGGCACTCGCCGCCCAGGCTGGA
CACTTTCCTAATGATTTTCTTCGTACCTACACAATTTAACACTCAGGCTA
ACGCTCTCACTCGGAGCTAAGAGTATGTGTCTTACTACCTAGCGGGGTAC
TGCTGTCTGTGTACCTACATTTTAACACTCAGGCTAACGCTCTCACTCGG
AGCTAAGAGTATGTGTCTTACTACCTAGCGGGGTACTGCTGTCTGTGTAC
CTACATCATGTACATCAGATAAATATTCTTAATGTAACCGGTTAATTACT
TCAACGTATTTTTTTTTCAAAAAACGATTTTTCAGAATGTGTCTCCATCA
GTCAGTCCCCCTGGAACGACTTTTTCCCAGGTTGGACGTACGCAAGAGTA
GCAGGTCTTACCGACGAAATCAAGATTGAAAATTTTCAACTGCCGTTTTT
ATCGCACAACCTGTGCGATACATAGCACAGTGCCCCGAGATCGCACATGC
CTGCGCGATAAAAAATCCAGTTTTATTAAACTATTTAGAAATAGTGTGTC
CAACAGCAGTCCCTCTGGAACGACTTTTTGACAGGTTGGACGTACGTAAA
CCGTTGACATTTGTAGAACATTTGTTAGACTACTGTGTGGGTGCCAACAA
CATTAAAAGAAGAAAAGAGTAAAACTTCCCCATAGAAAGGCGAGACCTCG
AGGTGACTTGGCAATTCCACACAGGCTCTGTGTATACGCCGTCCCGCCGT
CCCGCGCGAGTGGAAATACACCGAACGAACACGTTGAAGTTCGGCTTGTT
TTTTGGCATGAGTTGCGCTCGCCAACCCTAGCAAGCTACCTCGGTAGCTC
GTTCCATGACAGTCCCGCGGCGAATTCAGGGCAGAAGCTGCGTCTATTCG
CCCGGCGTCCATTTACCCGGAGAGGGTGTGGTGTGTGGTGTGTGCAAAGA
TGAGGAATGTCAGAGTCAAGCGTCGGGTTTCGGTTGGTGGGCGACTTGCA
GGGAGTTCGCGAGTGCGAGAGGGATGAAGCAACGTCGTGAAAGCACGTGC
TATCTTCAAGACTCTCACGATTCCGCTCTCGGTACGACGGCCCGCCCCAG
ACGCAGCGGGAGCTTCGCTAGATTTCCCCGCCCCCCCCGTTTTGGCGTCA
GACGAGCGCGAAAGATGGTGAGGAGCGCAGCACGTCTGCCCCTCTGAACT
ACACCAACAGATCTCGCGCCCCATGTGGCCATCCCCTCTCTCCTTCGCCT
GTCGATGTAAATAAAATCATACCAATATTAACCAAATCTATGATTCAAAT
CCAAAATCAAATCGACATCTTTGCATCTCCAACACCGCAGCGTACAGACT
CTTCATCGTCATCCCCGAAGCCTCCCGGCAGCAGTGGCGGCAAGCCCGAG
GGCCGCAACCTCTCCTTCGGGAGCTTGTCCGGGATTTCGAGCAGTGCGTC
GTCGGCGCTCAGAGGCTTGGCGGCCGGCGTGGGCGTTGTTGGGCTGGGGG
TTGGCGGCGGCGGTGGCGGCGGTGGCAGCGGTAGCACTACCAACTCGGAG
back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17893:475..3124+
>mRNA_L-elsbetiae_contig17893.5107.1 ID=mRNA_L-elsbetiae_contig17893.5107.1|Name=mRNA_L-elsbetiae_contig17893.5107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig17893:475..3124+ (Laminarionema elsbetiae ELsaHSoW15) ATGGCAACCCGCACGGAGCAAGGTTCTTCCACCGCTGGTTCTAAACAAGC AGGCATCCTGTCGAGCGTTACCAGAGCTGCCCTGAGAGGGAGGACGGCGA CGCTGGGTGCCTTTAATCGATCATCTCCCAGCATGGCAACCCGCACGGAG CAAGGTTCTTCCACCGCTGGTTCTAAACAAGCAGGCATCCTGTCGAGCGT TACCAGAGCTGCCCTGAGAGGGAGGACGGCGACGCTGGGTGCCTTTAATC GATCATCTCCCAGCCGTACAGACTCTTCATCGTCATCCCCGAAGCCTCCC GGCAGCAGTGGCGGCAAGCCCGAGGGCCGCAACCTCTCCTTCGGGAGCTT GTCCGGGATTTCGAGCAGTGCGTCGTCGGCGCTCAGAGGCTTGGCGGCCG GCGTGGGCGTTGTTGGGCTGGGGGTTGGCGGCGGCGGTGGCGGCGGTGGC AGCGGTAGCACTACCAACTCGGAGCGTACAGACTCTTCATCGTCATCCCC GAAGCCTCCCGGCAGCAGTGGCGGCAAGCCCGAGGGCCGCAACCTCTCCT TCGGGAGCTTGTCCGGGATTTCGAGCAGTGCGTCGTCGGCGCTCAGAGGC TTGGCGGCCGGCGTGGGCGTTGTTGGGCTGGGGGTTGGCGGCGGCGGTGG CGGCGGTGGCAGCGGTAGCACTACCAACTCGGAG back to top