Homology
BLAST of mRNA_L-elsbetiae_contig17889.5103.1 vs. uniprot
Match:
D7G0U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U5_ECTSI)
HSP 1 Score: 81.3 bits (199), Expect = 1.910e-12
Identity = 152/466 (32.62%), Postives = 187/466 (40.13%), Query Frame = 1
Query: 277 HPSKKRRTPSPEADRRAPSATGLVSAELAGADETAEEAAASRERA-----------------LQEAEVIRWCQKVSSSRGMSSAGGSGGDSGVGSSVSSGDEERFFAGRVLDPAPR-----PARSRQGGS-------GSGSRDTRIAS----LNNGSLGW-VGEMMEEASPARSQQHNGNGDGGXXXXXXADGSGGFRGGSSREDERATTKAGESGAVLPAASSDYPRGRQSGAEIAAALASASGAAASAETVQALGNEAVPKAA-AGPGQGSTSCPSNTNQEAFFARHTLEPKPRLRGTVAPLAAQGEAPESGEFSSNFG----------------PGXXXXXXXXXXXSGSRSWT-EHLSPPRGSDALGSHRLIPREEEVLXXXXXXXXXXXXXXXXXSSGSSMDWQVRPEAMMGYFTTVGGVA--PPSLLRPGRRRGAAGARARARQSSPGVAAAAAARHGEQ 1512
H SKK RTPSPE+ R++ A + G+ AAA+R A L+EAEVI+WCQ+ SS R +S GG ++G +E+FFA RVLDP P AR+R GGS G G+ +T +S L L + VGE+ + R H+G+G G D + G S DE A G + A P A+ R + AALASA G G+ S PS QE FFA HTLEP P VA GEA +G + G P +GS S E +P SD G R P EEV SSGS+ DWQVRP AM G+FTTVG A P +LL RR R S P V AA AR G Q
Sbjct: 259 HASKKHRTPSPESARKSSLAAEDAADSAMGSSNAG--AAAARPGAXXXXXXXXXXXXXXXXXLREAEVIQWCQRGSSPRAISGDGG----------AAAGPDEKFFAARVLDPVPARHWPGTARTRTGGSKVSDAVFGWGAAETAASSSPPPLRPPCLRFGVGELSGDGR--REDNHSGSGSSGG-----TDAASGLDQFPSSRDEAAMV--GVTRAASPPAAKCNSRSPLASGFAGAALASAXXXXXXXXXXXXXXXXXXXXXXXTGSGR---SPPSAREQEGFFASHTLEPSPGRSWIVA----AGEAGSAGGETHRAGASGTTVPKPAHGIPMPPDSQRSDDDASGAAGSGSERREGHNPLCWSDTAG--RYPPLFEEVAAGAAVVDTE--------SSGSANDWQVRPGAMAGFFTTVGHSACSPAALLLSQRRPSPPRVR-----SPPAVGPAAPARVGIQ 681
BLAST of mRNA_L-elsbetiae_contig17889.5103.1 vs. uniprot
Match:
A0A6H5JYD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD8_9PHAE)
HSP 1 Score: 76.6 bits (187), Expect = 6.060e-11
Identity = 126/425 (29.65%), Postives = 168/425 (39.53%), Query Frame = 1
Query: 277 HPSKKRRTPSPEADRRAPSATGLVSAELAGADETAEEAAASRERALQE-----------------AEVIRWCQKVSSSRGMSSAGGSGGDSGVGSSVSSGDEERFFAGRVLDPAPR-----PARSRQGGS-------GSGSRDTRIASLNNG------SLGWVGEMMEEASPARSQQHNGNGDGGXXXXXXADGSGGFRGGSSREDERATTKAGESGAVLPAASSDYPRGRQSGAEIAAALASASGAAASAETVQALGNEAVPKAAAGPGQGSTSCPSNTNQEAFFARHTLEPKPRLRGTVAPLAAQGEAPESGEFSSNFGPGXXXXXXXXXXXSGSRSWTEHLSPPR--GSDALGSHRLIPREEEV--LXXXXXXXXXXXXXXXXXSSGSSMDWQVRPEAMMGYFTTV--GGVAPPSLLRPGRR 1428
H KKRRTPSP+ R++ A + G+ AAA+R A+ AEVIRWCQ+VSS+R MS GG+ G SS ++G +E+FFAGRVL+P P AR+R GGS G G+ T +SL LG VG + + + GG +D + SSR++E AG + A P + R + AALAS + S PS Q+ F HTLEPKPR R + A+G A + + G S+ S P GS H + + SSGS+ DWQVRPEAM+G+FTTV +P +LL RR
Sbjct: 433 HAPKKRRTPSPDTARKSSPAAEDAAHSAMGSSSAG--AAAARPGAVDXXXXXXXXXXXXXXXXXXAEVIRWCQRVSSARAMSGDGGAAPGVGGISSSAAGPDEKFFAGRVLEPVPSRHWPGTARTRTGGSNVSDAVFGRGAAVTAASSLPPPLQPPYLGLG-VGNLSSRGRGDDNHRSGSGSSGGTDATRDSD-----QCPSSRDEE---AMAGVTRAASPPTAKCNSRIPLASGFAGAALASXXXX--XXXXXXXXXXXXXXXXXXXXXESRQSPPSAQEQQGFLDSHTLEPKPR-RSWILAAGAEGSARGETQGAGASGTAVPKPAHGIPMPPDSQRSDHDASGPAWSGSQRREGHNPLCWSDTAGRNPPVFEEGAAGAAVADTESSGSANDWQVRPEAMVGFFTTVDHSACSPAALLHSQRR 843
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17889.5103.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.91e-12 / Id = 32.62 Expect = 6.06e-11 / Id = 29.65 Sequence D7G0U5_ECTSI A0A6H5JYD8_9PHAE
Match Name E-value Identity Description
D7G0U5_ECTSI 1.910e-12 32.62 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYD8_9PHAE 6.060e-11 29.65 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 2
Model size 1583
Cds size 1581
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815745.1591504-CDS-L-elsbetiae_contig17889:617..1948 1622815745.1591504-CDS-L-elsbetiae_contig17889:617..1948 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17889 618..1948 +
1691683075.0104048-CDS-L-elsbetiae_contig17889:617..1948 1691683075.0104048-CDS-L-elsbetiae_contig17889:617..1948 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17889 618..1948 +
1622815745.1722767-CDS-L-elsbetiae_contig17889:2696..2946 1622815745.1722767-CDS-L-elsbetiae_contig17889:2696..2946 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17889 2697..2946 +
1691683075.0199144-CDS-L-elsbetiae_contig17889:2696..2946 1691683075.0199144-CDS-L-elsbetiae_contig17889:2696..2946 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig17889 2697..2946 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17889.5103.1
>prot_L-elsbetiae_contig17889.5103.1 ID=prot_L-elsbetiae_contig17889.5103.1|Name=mRNA_L-elsbetiae_contig17889.5103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=527bp
SGDDERRAGGGGRRGRAEDGNSSSGSSGGGGRDGGGKRPGVRRRQEDGNS RNSSEERNGRLGWDVGRSWGTGGGRAHSSGKTDRRRCKEEGGHPSKKRRT PSPEADRRAPSATGLVSAELAGADETAEEAAASRERALQEAEVIRWCQKV SSSRGMSSAGGSGGDSGVGSSVSSGDEERFFAGRVLDPAPRPARSRQGGS GSGSRDTRIASLNNGSLGWVGEMMEEASPARSQQHNGNGDGGNGNGFGAD GSGGFRGGSSREDERATTKAGESGAVLPAASSDYPRGRQSGAEIAAALAS ASGAAASAETVQALGNEAVPKAAAGPGQGSTSCPSNTNQEAFFARHTLEP KPRLRGTVAPLAAQGEAPESGEFSSNFGPGGGGGGGGSDGGSGSRSWTEH LSPPRGSDALGSHRLIPREEEVLAAAAVAAKAAAAVSAAESSGSSMDWQV RPEAMMGYFTTVGGVAPPSLLRPGRRRGAAGARARARQSSPGVAAAAAAR HGEQLAVPAGEPHPGGQPPPCGSGAPP back to top mRNA from alignment at L-elsbetiae_contig17889:618..2947+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17889.5103.1 ID=mRNA_L-elsbetiae_contig17889.5103.1|Name=mRNA_L-elsbetiae_contig17889.5103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2330bp|location=Sequence derived from alignment at L-elsbetiae_contig17889:618..2947+ (Laminarionema elsbetiae ELsaHSoW15)AGCGGAGACGACGAGCGGCGAGCGGGGGGGGGCGGGAGGCGAGGCCGGGC
GGAGGACGGCAACAGCAGCAGCGGCAGCAGCGGCGGCGGCGGCAGAGACG
GCGGCGGCAAGAGGCCCGGTGTTCGACGACGGCAGGAAGACGGAAACTCT
CGCAATAGCAGCGAAGAGCGCAACGGAAGACTAGGCTGGGACGTGGGCAG
GAGCTGGGGAACGGGCGGCGGTAGAGCTCATAGCAGCGGCAAGACAGACC
GCAGGCGCTGCAAAGAAGAGGGCGGCCACCCTTCCAAGAAGCGCCGCACG
CCTAGCCCCGAGGCTGACCGGAGGGCTCCGTCGGCCACCGGGTTGGTCTC
GGCCGAGTTGGCGGGGGCCGATGAGACGGCGGAGGAGGCGGCGGCCTCGC
GGGAGCGGGCGCTGCAGGAGGCCGAGGTGATACGGTGGTGCCAGAAAGTC
TCGAGCTCTCGCGGGATGTCCTCGGCGGGCGGCAGCGGCGGCGACAGCGG
GGTCGGCAGCAGCGTCTCCAGCGGGGACGAGGAGAGGTTCTTCGCCGGAA
GGGTCCTGGACCCGGCCCCCCGGCCGGCGCGCAGCCGCCAAGGCGGTAGC
GGGTCGGGCAGCCGTGATACGAGAATCGCCAGCCTCAACAACGGAAGTCT
GGGCTGGGTGGGCGAGATGATGGAAGAGGCGTCACCAGCTCGGTCGCAGC
AGCACAATGGCAACGGCGACGGCGGGAACGGGAACGGGTTCGGCGCCGAC
GGTAGTGGTGGTTTCCGCGGCGGTTCCTCCAGGGAAGATGAACGAGCGAC
GACAAAAGCGGGCGAATCAGGGGCGGTGTTGCCGGCGGCGAGCTCGGATT
ACCCGAGGGGACGCCAGTCGGGGGCAGAAATCGCTGCCGCTCTCGCATCG
GCTTCAGGTGCCGCCGCCTCCGCCGAGACCGTGCAGGCTTTGGGGAACGA
AGCAGTACCAAAGGCTGCGGCGGGGCCGGGACAAGGGTCGACCTCGTGCC
CGTCCAACACAAACCAAGAAGCTTTTTTCGCGCGGCATACTCTTGAGCCG
AAGCCGCGCCTGCGGGGCACCGTGGCTCCGCTGGCCGCACAGGGGGAGGC
GCCAGAGTCGGGGGAATTTTCCAGCAATTTCGGCCCCGGCGGCGGCGGCG
GCGGCGGCGGGAGCGATGGTGGTAGTGGATCGAGAAGCTGGACTGAGCAC
CTGAGCCCACCCCGAGGCAGCGATGCGCTCGGTTCTCATCGCCTTATTCC
TCGGGAAGAAGAGGTCCTTGCGGCGGCGGCAGTAGCGGCAAAGGCAGCGG
CGGCAGTGTCGGCAGCAGAATCCAGCGGCAG GTGACCTGAGTTACACAGC
GTAGTTGGGGGGGTATTTAGAGTTATCGGGCGGTTTTTTGCGGTGCCGAA
ACTGTTTTTGCCACGGCTCTGCCGCTCAATTACATACTGTTGTTTCTCGT
GAGTGCTGGAGGTAGCGGTGGAAGTGGAGGTGCATTCGTCGCGATGTAAG
ATCGGCGAAGCTTATTTCCGCAGCGGTTTGTTGGTACCCCAGAGCAGCAA
ACATCAGACAGACAAAAAGACGGCTTCATTTTTATTTATGTTTTGCTTCT
TTTTTTCGCGCGCGCGCACGCAAAGATGCCATACGCATGTACTCCCACAA
CAAGCATTCCGTGAACAAAAAAAACACCCCAACTATGATTGCGCAGCTTG
CTGACTTGGTGCCAGTGGTTAGGGTTGCGGTGAGGGAGGGTGATGTAGTG
TGTCTACATACCAACAGCAGTCCCCCTGAAAAACGACTTTTTTTCACAGG
CTGGGACGTAGACCGCTGACACCTGTACACAGACTCTTGTTAAAAGGAAG
GCAGCATCAGGAACGCAGCATTCAACGCAGCCTGTGAGACGAGCAGAAAA
AACGAAGAAAAGCTGTTCTGGTGCTCTTCCTCGCATGTTTTCGCTCTCGA
CGTGCGCAGCCTCTGTATGTCTCGCGCAGGCTTTTTGCTGCTTTCACGCT
TCTACTTACATACCTGCTCGCACGAGGTTCCAACCTTTGACCCCCCCTCC
CCCCCCGCCCCTCCGCCTACATGATGCAGCAGCATGGACTGGCAGGTGCG
GCCGGAAGCTATGATGGGATATTTCACGACTGTGGGTGGGGTGGCTCCTC
CGTCGTTGCTCCGGCCTGGCCGGCGGCGCGGCGCCGCCGGTGCCCGTGCC
CGTGCCCGGCAATCCTCTCCCGGTGTCGCGGCGGCGGCGGCGGCGAGGCA
TGGGGAGCAGCTCGCGGTCCCCGCGGGAGAGCCACATCCTGGAGGGCAGC
CGCCTCCGTGCGGGAGCGGTGCACCGCCT G back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17889:618..2947+
>mRNA_L-elsbetiae_contig17889.5103.1 ID=mRNA_L-elsbetiae_contig17889.5103.1|Name=mRNA_L-elsbetiae_contig17889.5103.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3162bp|location=Sequence derived from alignment at L-elsbetiae_contig17889:618..2947+ (Laminarionema elsbetiae ELsaHSoW15) AGCGGAGACGACGAGCGGCGAGCGGGGGGGGGCGGGAGGCGAGGCCGGGC GGAGGACGGCAACAGCAGCAGCGGCAGCAGCGGCGGCGGCGGCAGAGACG GCGGCGGCAAGAGGCCCGGTGTTCGACGACGGCAGGAAGACGGAAACTCT CGCAATAGCAGCGAAGAGCGCAACGGAAGACTAGGCTGGGACGTGGGCAG GAGCTGGGGAACGGGCGGCGGTAGAGCTCATAGCAGCGGCAAGACAGACC GCAGGCGCTGCAAAGAAGAGGGCGGCCACCCTTCCAAGAAGCGCCGCACG CCTAGCCCCGAGGCTGACCGGAGGGCTCCGTCGGCCACCGGGTTGGTCTC GGCCGAGTTGGCGGGGGCCGATGAGACGGCGGAGGAGGCGGCGGCCTCGC GGGAGCGGGCGCTGCAGGAGGCCGAGGTGATACGGTGGTGCCAGAAAGTC TCGAGCTCTCGCGGGATGTCCTCGGCGGGCGGCAGCGGCGGCGACAGCGG GGTCGGCAGCAGCGTCTCCAGCGGGGACGAGGAGAGGTTCTTCGCCGGAA GGGTCCTGGACCCGGCCCCCCGGCCGGCGCGCAGCCGCCAAGGCGGTAGC GGGTCGGGCAGCCGTGATACGAGAATCGCCAGCCTCAACAACGGAAGTCT GGGCTGGGTGGGCGAGATGATGGAAGAGGCGTCACCAGCTCGGTCGCAGC AGCACAATGGCAACGGCGACGGCGGGAACGGGAACGGGTTCGGCGCCGAC GGTAGTGGTGGTTTCCGCGGCGGTTCCTCCAGGGAAGATGAACGAGCGAC GACAAAAGCGGGCGAATCAGGGGCGGTGTTGCCGGCGGCGAGCTCGGATT ACCCGAGGGGACGCCAGTCGGGGGCAGAAATCGCTGCCGCTCTCGCATCG GCTTCAGGTGCCGCCGCCTCCGCCGAGACCGTGCAGGCTTTGGGGAACGA AGCAGTACCAAAGGCTGCGGCGGGGCCGGGACAAGGGTCGACCTCGTGCC CGTCCAACACAAACCAAGAAGCTTTTTTCGCGCGGCATACTCTTGAGCCG AAGCCGCGCCTGCGGGGCACCGTGGCTCCGCTGGCCGCACAGGGGGAGGC GCCAGAGTCGGGGGAATTTTCCAGCAATTTCGGCCCCGGCGGCGGCGGCG GCGGCGGCGGGAGCGATGGTGGTAGTGGATCGAGAAGCTGGACTGAGCAC CTGAGCCCACCCCGAGGCAGCGATGCGCTCGGTTCTCATCGCCTTATTCC TCGGGAAGAAGAGGTCCTTGCGGCGGCGGCAGTAGCGGCAAAGGCAGCGG CGGCAGTGTCGGCAGCAGAATCCAGCGGCAGAGCGGAGACGACGAGCGGC GAGCGGGGGGGGGCGGGAGGCGAGGCCGGGCGGAGGACGGCAACAGCAGC AGCGGCAGCAGCGGCGGCGGCGGCAGAGACGGCGGCGGCAAGAGGCCCGG TGTTCGACGACGGCAGGAAGACGGAAACTCTCGCAATAGCAGCGAAGAGC GCAACGGAAGACTAGGCTGGGACGTGGGCAGGAGCTGGGGAACGGGCGGC GGTAGAGCTCATAGCAGCGGCAAGACAGACCGCAGGCGCTGCAAAGAAGA GGGCGGCCACCCTTCCAAGAAGCGCCGCACGCCTAGCCCCGAGGCTGACC GGAGGGCTCCGTCGGCCACCGGGTTGGTCTCGGCCGAGTTGGCGGGGGCC GATGAGACGGCGGAGGAGGCGGCGGCCTCGCGGGAGCGGGCGCTGCAGGA GGCCGAGGTGATACGGTGGTGCCAGAAAGTCTCGAGCTCTCGCGGGATGT CCTCGGCGGGCGGCAGCGGCGGCGACAGCGGGGTCGGCAGCAGCGTCTCC AGCGGGGACGAGGAGAGGTTCTTCGCCGGAAGGGTCCTGGACCCGGCCCC CCGGCCGGCGCGCAGCCGCCAAGGCGGTAGCGGGTCGGGCAGCCGTGATA CGAGAATCGCCAGCCTCAACAACGGAAGTCTGGGCTGGGTGGGCGAGATG ATGGAAGAGGCGTCACCAGCTCGGTCGCAGCAGCACAATGGCAACGGCGA CGGCGGGAACGGGAACGGGTTCGGCGCCGACGGTAGTGGTGGTTTCCGCG GCGGTTCCTCCAGGGAAGATGAACGAGCGACGACAAAAGCGGGCGAATCA GGGGCGGTGTTGCCGGCGGCGAGCTCGGATTACCCGAGGGGACGCCAGTC GGGGGCAGAAATCGCTGCCGCTCTCGCATCGGCTTCAGGTGCCGCCGCCT CCGCCGAGACCGTGCAGGCTTTGGGGAACGAAGCAGTACCAAAGGCTGCG GCGGGGCCGGGACAAGGGTCGACCTCGTGCCCGTCCAACACAAACCAAGA AGCTTTTTTCGCGCGGCATACTCTTGAGCCGAAGCCGCGCCTGCGGGGCA CCGTGGCTCCGCTGGCCGCACAGGGGGAGGCGCCAGAGTCGGGGGAATTT TCCAGCAATTTCGGCCCCGGCGGCGGCGGCGGCGGCGGCGGGAGCGATGG TGGTAGTGGATCGAGAAGCTGGACTGAGCACCTGAGCCCACCCCGAGGCA GCGATGCGCTCGGTTCTCATCGCCTTATTCCTCGGGAAGAAGAGGTCCTT GCGGCGGCGGCAGTAGCGGCAAAGGCAGCGGCGGCAGTGTCGGCAGCAGA ATCCAGCGGCAGCAGCATGGACTGGCAGGTGCGGCCGGAAGCTATGATGG GATATTTCACGACTGTGGGTGGGGTGGCTCCTCCGTCGTTGCTCCGGCCT GGCCGGCGGCGCGGCGCCGCCGGTGCCCGTGCCCGTGCCCGGCAATCCTC TCCCGGTGTCGCGGCGGCGGCGGCGGCGAGGCATGGGGAGCAGCTCGCGG TCCCCGCGGGAGAGCCACATCCTGGAGGGCAGCCGCCTCCGTGCGGGAGC GGTGCACCGCCTCAGCATGGACTGGCAGGTGCGGCCGGAAGCTATGATGG GATATTTCACGACTGTGGGTGGGGTGGCTCCTCCGTCGTTGCTCCGGCCT GGCCGGCGGCGCGGCGCCGCCGGTGCCCGTGCCCGTGCCCGGCAATCCTC TCCCGGTGTCGCGGCGGCGGCGGCGGCGAGGCATGGGGAGCAGCTCGCGG TCCCCGCGGGAGAGCCACATCCTGGAGGGCAGCCGCCTCCGTGCGGGAGC GGTGCACCGCCT back to top