prot_L-elsbetiae_contig9547.18534.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9547.18534.1
Unique Nameprot_L-elsbetiae_contig9547.18534.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length180
Homology
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BLAST of mRNA_L-elsbetiae_contig9547.18534.1 vs. uniprot
Match: A0A833V713_9POAL (Putative leucine-rich repeat receptor-like protein kinase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833V713_9POAL)

HSP 1 Score: 57.0 bits (136), Expect = 2.660e-6
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 0 
Query:    1 LAGPIPQELGNLRELQTLWLNRNQLTALVSTKFHNSRDIFCSTL--LNCPALTRSS-AGNIPPQLGQLGALEFLNLANNKLDGELNRSKSDFLSIF-ILNTDELVLAL-PLAGSIPPELGNLAALKTLYLDQNQLS 131
            + G + +E+GNL++L+ L L+ N        K   +  +  S L  LN  AL  ++  G IPP LG+L  L +L+LA+N+L G L  S  D   +  +L    L+L    L G IP  +G + AL+ + LD N+L+
Sbjct:    3 IQGTLSEEIGNLKQLRILDLSSNM-------KLGGTLPVTLSNLVHLNNLALNVNNFTGKIPPSLGKLSKLTWLDLADNQLSGALPISAKDGWGLDQLLKAKHLLLDRNQLKGPIPKSIGLVQALEVIRLDNNRLT 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9547.18534.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A833V713_9POAL2.660e-634.56Putative leucine-rich repeat receptor-like protein... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 141..164
e-value: 47.0
score: 7.7
coord: 117..140
e-value: 120.0
score: 4.3
coord: 12..35
e-value: 1.6
score: 17.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..102
e-value: 9.1E-11
score: 43.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 103..180
e-value: 1.1E-22
score: 82.2
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 120..178
e-value: 2.0E-9
score: 37.1
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 54..144
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 103..180
coord: 2..84
NoneNo IPR availablePANTHERPTHR45974:SF116LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK1-RELATEDcoord: 54..144
NoneNo IPR availablePANTHERPTHR45974:SF116LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK1-RELATEDcoord: 103..180
coord: 2..84
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 3..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9547contigL-elsbetiae_contig9547:6681..7531 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9547.18534.1mRNA_L-elsbetiae_contig9547.18534.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9547 6681..7531 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9547.18534.1 ID=prot_L-elsbetiae_contig9547.18534.1|Name=mRNA_L-elsbetiae_contig9547.18534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
LAGPIPQELGNLRELQTLWLNRNQLTALVSTKFHNSRDIFCSTLLNCPAL
TRSSAGNIPPQLGQLGALEFLNLANNKLDGELNRSKSDFLSIFILNTDEL
VLALPLAGSIPPELGNLAALKTLYLDQNQLSGDIPKELGDLSKLELLLLN
DNRLTGLIPAELGKLAALESLGLSGNNLSG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt