mRNA_L-elsbetiae_contig9547.18534.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9547.18534.1
Unique NamemRNA_L-elsbetiae_contig9547.18534.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9547.18534.1 vs. uniprot
Match: A0A833V713_9POAL (Putative leucine-rich repeat receptor-like protein kinase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833V713_9POAL)

HSP 1 Score: 57.0 bits (136), Expect = 2.660e-6
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 1 
Query:    1 LAGPIPQELGNLRELQTLWLNRNQLTALVSTKFHNSRDIFCSTL--LNCPALTRSS-AGNIPPQLGQLGALEFLNLANNKLDGELNRSKSDFLSIF-ILNTDELVLAL-PLAGSIPPELGNLAALKTLYLDQNQLS 393
            + G + +E+GNL++L+ L L+ N        K   +  +  S L  LN  AL  ++  G IPP LG+L  L +L+LA+N+L G L  S  D   +  +L    L+L    L G IP  +G + AL+ + LD N+L+
Sbjct:    3 IQGTLSEEIGNLKQLRILDLSSNM-------KLGGTLPVTLSNLVHLNNLALNVNNFTGKIPPSLGKLSKLTWLDLADNQLSGALPISAKDGWGLDQLLKAKHLLLDRNQLKGPIPKSIGLVQALEVIRLDNNRLT 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9547.18534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A833V713_9POAL2.660e-634.56Putative leucine-rich repeat receptor-like protein... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9547contigL-elsbetiae_contig9547:6681..7531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9547.18534.1prot_L-elsbetiae_contig9547.18534.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9547 6681..7531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817021.562429-CDS-L-elsbetiae_contig9547:6680..69541622817021.562429-CDS-L-elsbetiae_contig9547:6680..6954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9547 6681..6954 +
1691683988.6709557-CDS-L-elsbetiae_contig9547:6680..69541691683988.6709557-CDS-L-elsbetiae_contig9547:6680..6954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9547 6681..6954 +
1622817021.5726738-CDS-L-elsbetiae_contig9547:6997..71211622817021.5726738-CDS-L-elsbetiae_contig9547:6997..7121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9547 6998..7121 +
1691683988.6816633-CDS-L-elsbetiae_contig9547:6997..71211691683988.6816633-CDS-L-elsbetiae_contig9547:6997..7121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9547 6998..7121 +
1622817021.5834317-CDS-L-elsbetiae_contig9547:7248..73161622817021.5834317-CDS-L-elsbetiae_contig9547:7248..7316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9547 7249..7316 +
1691683988.691928-CDS-L-elsbetiae_contig9547:7248..73161691683988.691928-CDS-L-elsbetiae_contig9547:7248..7316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9547 7249..7316 +
1622817021.6232777-CDS-L-elsbetiae_contig9547:7457..75311622817021.6232777-CDS-L-elsbetiae_contig9547:7457..7531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9547 7458..7531 +
1691683988.7071059-CDS-L-elsbetiae_contig9547:7457..75311691683988.7071059-CDS-L-elsbetiae_contig9547:7457..7531Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9547 7458..7531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9547.18534.1

>prot_L-elsbetiae_contig9547.18534.1 ID=prot_L-elsbetiae_contig9547.18534.1|Name=mRNA_L-elsbetiae_contig9547.18534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
LAGPIPQELGNLRELQTLWLNRNQLTALVSTKFHNSRDIFCSTLLNCPAL
TRSSAGNIPPQLGQLGALEFLNLANNKLDGELNRSKSDFLSIFILNTDEL
VLALPLAGSIPPELGNLAALKTLYLDQNQLSGDIPKELGDLSKLELLLLN
DNRLTGLIPAELGKLAALESLGLSGNNLSG
back to top

mRNA from alignment at L-elsbetiae_contig9547:6681..7531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9547.18534.1 ID=mRNA_L-elsbetiae_contig9547.18534.1|Name=mRNA_L-elsbetiae_contig9547.18534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=851bp|location=Sequence derived from alignment at L-elsbetiae_contig9547:6681..7531+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGGGTCCCATCCCGCAGGAGCTGGGAAACCTTCGAGAACTGCAGAC
GCTGTGGCTCAACAGAAACCAGCTCACAGCGTTGGTGAGTACGAAATTTC
ACAACTCGCGGGATATCTTTTGTTCTACCCTGCTAAACTGCCCTGCTTTG
ACTCGTTCATCTGCAGGCAACATCCCGCCACAGCTCGGACAGCTTGGCGC
CCTCGAGTTCCTCAACCTCGCCAACAACAAGTTAGATGGTGAGTTGAACA
GATCGAAAAGCGATTTTCTTTCGAGTTCTGAACATGCATGAATCCCGAGT
ACGCCGGGTAGTTTTAGTTTTTATTCTGAACACTGATGAACTCGTACTTG
CGCTTCCGCTTGCAGGCTCCATCCCACCGGAGCTGGGAAACCTTGCAGCC
CTCAAGACCCTCTACCTTGATCAAAACCAGCTTAGCGGCGAGTCGTTCCG
TCGTCCGGTACATTTATCTCATATTTCCTCTCCATCAAATTTAGCTTGAA
CCAGGACCGTTTTTCTTGAAGCGCGAGCATTTATCTTACTCATGTGTCTA
CACTGCTTGTGCAGGAAGCATCCCGAAGGAGCTCGGTGATCTGAGCAAGC
TGGAGTTGCTTTTGCTCAACGACAACAGGCTGACCGGTGAGGGAGCCTAG
ATAAACGATTTGATTCCAGTTTCCTGGGACATGTGTTCTGCGTACGCGTT
GGCAGGACACATCTTCTAGAAGGTGGGGAATTGTGATTTTCCCCCCGCTG
AGTTCATGTTTGCTCGTTCGCCTGCAGGTCTCATCCCGGCAGAGTTGGGG
AAACTCGCAGCTCTGGAATCCCTCGGTCTTTCGGGGAACAACCTCAGCGG
T
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9547:6681..7531+

>mRNA_L-elsbetiae_contig9547.18534.1 ID=mRNA_L-elsbetiae_contig9547.18534.1|Name=mRNA_L-elsbetiae_contig9547.18534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig9547:6681..7531+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGGGTCCCATCCCGCAGGAGCTGGGAAACCTTCGAGAACTGCAGAC
GCTGTGGCTCAACAGAAACCAGCTCACAGCGTTGGTGAGTACGAAATTTC
ACAACTCGCGGGATATCTTTTGTTCTACCCTGCTAAACTGCCCTGCTTTG
ACTCGTTCATCTGCAGGCAACATCCCGCCACAGCTCGGACAGCTTGGCGC
CCTCGAGTTCCTCAACCTCGCCAACAACAAGTTAGATGGTGAGTTGAACA
GATCGAAAAGCGATTTTCTTTCGACTCGCGGGTCCCATCCCGCAGGAGCT
GGGAAACCTTCGAGAACTGCAGACGCTGTGGCTCAACAGAAACCAGCTCA
CAGCGTTGGTGAGTACGAAATTTCACAACTCGCGGGATATCTTTTGTTCT
ACCCTGCTAAACTGCCCTGCTTTGACTCGTTCATCTGCAGGCAACATCCC
GCCACAGCTCGGACAGCTTGGCGCCCTCGAGTTCCTCAACCTCGCCAACA
ACAAGTTAGATGGTGAGTTGAACAGATCGAAAAGCGATTTTCTTTCGATT
TTTATTCTGAACACTGATGAACTCGTACTTGCGCTTCCGCTTGCAGGCTC
CATCCCACCGGAGCTGGGAAACCTTGCAGCCCTCAAGACCCTCTACCTTG
ATCAAAACCAGCTTAGCGGCGATTTTTATTCTGAACACTGATGAACTCGT
ACTTGCGCTTCCGCTTGCAGGCTCCATCCCACCGGAGCTGGGAAACCTTG
CAGCCCTCAAGACCCTCTACCTTGATCAAAACCAGCTTAGCGGCGACATC
CCGAAGGAGCTCGGTGATCTGAGCAAGCTGGAGTTGCTTTTGCTCAACGA
CAACAGGCTGACCGCATCCCGAAGGAGCTCGGTGATCTGAGCAAGCTGGA
GTTGCTTTTGCTCAACGACAACAGGCTGACCGGTCTCATCCCGGCAGAGT
TGGGGAAACTCGCAGCTCTGGAATCCCTCGGTCTTTCGGGGAACAACCTC
AGCGGTGTCTCATCCCGGCAGAGTTGGGGAAACTCGCAGCTCTGGAATCC
CTCGGTCTTTCGGGGAACAACCTCAGCGGT
back to top