prot_L-elsbetiae_contig9164.18189.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9164.18189.1
Unique Nameprot_L-elsbetiae_contig9164.18189.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length248
Homology
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BLAST of mRNA_L-elsbetiae_contig9164.18189.1 vs. uniprot
Match: A0A836C8H6_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.360e-5
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 0 
Query:    5 RKNCDLCVSRKARCNGQAGGPGCSCCRKMGKACIFSAKLKPGPKGAGVS 53
            RKNCDLC SRK +C+GQ G P CS C K G  C++S K + GPK   +S
Sbjct:  161 RKNCDLCCSRKLKCDGQ-GSP-CSQCAKKGVQCVYSLKARVGPKPRNMS 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9164.18189.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C8H6_9STRA2.360e-555.10Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 226..246
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 3..61
e-value: 1.6E-6
score: 30.0
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 5..43
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 7..39
score: 8.995

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9164contigL-elsbetiae_contig9164:630..2865 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9164.18189.1mRNA_L-elsbetiae_contig9164.18189.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9164 111..2865 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9164.18189.1 ID=prot_L-elsbetiae_contig9164.18189.1|Name=mRNA_L-elsbetiae_contig9164.18189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
MIVLRKNCDLCVSRKARCNGQAGGPGCSCCRKMGKACIFSAKLKPGPKGA
GVSSLNTLRSIAPAAIQSLLVHSSPVPSSSSDGSDGGDGIGDFGDASIRF
GGGSGSDGCGGGSGGGGAAAGVGPGSPGGGGGGGGSSGSGHAAAKTGTMD
FSGGGGGGSSSITEPHYNEGPQHTPSKRCGEPPAGKTTACDAGHRAKRQK
IIDGTAPETLVASATTPSRRQKPWDGRQLQQLYEQGKKELGQLQQEER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd