mRNA_L-elsbetiae_contig9164.18189.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9164.18189.1
Unique NamemRNA_L-elsbetiae_contig9164.18189.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9164.18189.1 vs. uniprot
Match: A0A836C8H6_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.800e-5
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:  511 DWTMIVLRKNCDLCVSRKARCNGQAGGPGCSCCRKMGKACIFSAKLKPGPKGAGVS 678
             W     RKNCDLC SRK +C+GQ G P CS C K G  C++S K + GPK   +S
Sbjct:  154 QWLTGYYRKNCDLCCSRKLKCDGQ-GSP-CSQCAKKGVQCVYSLKARVGPKPRNMS 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9164.18189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C8H6_9STRA5.800e-550.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9164contigL-elsbetiae_contig9164:111..2865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-17_000020.1
Exons3
Model size1264
Cds size744
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9164.18189.1prot_L-elsbetiae_contig9164.18189.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9164 630..2865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816990.6502979-UTR-L-elsbetiae_contig9164:110..6291622816990.6502979-UTR-L-elsbetiae_contig9164:110..629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9164 111..629 +
1691683965.8516593-UTR-L-elsbetiae_contig9164:110..6291691683965.8516593-UTR-L-elsbetiae_contig9164:110..629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9164 111..629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816990.664068-CDS-L-elsbetiae_contig9164:629..6741622816990.664068-CDS-L-elsbetiae_contig9164:629..674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9164 630..674 +
1691683965.86165-CDS-L-elsbetiae_contig9164:629..6741691683965.86165-CDS-L-elsbetiae_contig9164:629..674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9164 630..674 +
1622816990.6767693-CDS-L-elsbetiae_contig9164:1596..20581622816990.6767693-CDS-L-elsbetiae_contig9164:1596..2058Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9164 1597..2058 +
1691683965.8707154-CDS-L-elsbetiae_contig9164:1596..20581691683965.8707154-CDS-L-elsbetiae_contig9164:1596..2058Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9164 1597..2058 +
1622816990.6899745-CDS-L-elsbetiae_contig9164:2628..28651622816990.6899745-CDS-L-elsbetiae_contig9164:2628..2865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9164 2629..2865 +
1691683965.879643-CDS-L-elsbetiae_contig9164:2628..28651691683965.879643-CDS-L-elsbetiae_contig9164:2628..2865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9164 2629..2865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9164.18189.1

>prot_L-elsbetiae_contig9164.18189.1 ID=prot_L-elsbetiae_contig9164.18189.1|Name=mRNA_L-elsbetiae_contig9164.18189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
MIVLRKNCDLCVSRKARCNGQAGGPGCSCCRKMGKACIFSAKLKPGPKGA
GVSSLNTLRSIAPAAIQSLLVHSSPVPSSSSDGSDGGDGIGDFGDASIRF
GGGSGSDGCGGGSGGGGAAAGVGPGSPGGGGGGGGSSGSGHAAAKTGTMD
FSGGGGGGSSSITEPHYNEGPQHTPSKRCGEPPAGKTTACDAGHRAKRQK
IIDGTAPETLVASATTPSRRQKPWDGRQLQQLYEQGKKELGQLQQEER
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mRNA from alignment at L-elsbetiae_contig9164:111..2865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9164.18189.1 ID=mRNA_L-elsbetiae_contig9164.18189.1|Name=mRNA_L-elsbetiae_contig9164.18189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2755bp|location=Sequence derived from alignment at L-elsbetiae_contig9164:111..2865+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGACGATCAATATGGCCTTTTGAGATGCTGAACTTAGAGGCCCTTCTT
GGGCGCGCACAGCAGTACAGTAGTAGTAGCAGTCTTGGCGTGGTTTGCCC
AAAAAATTACAGGAAATAAAGTACATTTATTTGATTTGCCGCAGAATGAA
GCAATAGTGTGGGCTCTCCTCCCCAATCCACCAGACTTTAAACGGCAGAA
GAGCTTACTGTAGTCTACTGCACTTAACCTGGCAAAAAAACAGCCCTCGG
GCGCAATAACAGACAGTCAAGTCTTCCCTTTCGTCGTCGGATGATTTCCC
TCTCCCGCTCTCCTCGTGTATTCCTCCATCCTTGATGCTTCTTCAGCGCC
AACGGCAGGGTTCCTTCTACAAGCAAGCAGCACCACGAGGGTTCGTAGTC
GACGGCAGCGAAGCCAACATCTGGCAAAAAAACTCCGGTTAGCAGGCGAC
ATCCGATCTGCTCTTTGAGGTTTGGCGGCTAGTCTATTGCCTCCGGCAGC
ATTTACACGAGATTGGACGATGATTGTTCTGCGTAAGAACTGCGACTTGT
GCGTCTCGAGGAAGGTGAGCAGGCAAACATGTAGCTGCTGCCCGAAAAAC
CTGTCGCAATTTAGATTGCTGACGCCAATAGTAGTACCTTGCCTTGACCT
CCCCTACATTTGTTTTTCTTCTTCCCATTACTGGCTTATTCGTCGTCAGC
CCCACTGGCCCCCTTCCTCCGCTACGATCGGCTAGACGACCCAACCGGGG
TCATACCAACGGCTGGTTGATGCTGTGTTTTTTGTGTTTCGTCCACCGCA
CTTGTCCGAGGTCGGCCGCAAACTATTGCATACCCCTTTGAGTTCGCCCG
GACGGCGAACATAGTTTTTGGTACCAAAGAACGCCCCTGGGCGAACTCAA
AGGGCGGGGGGCGAAAAAAAGGAGAAATACAGAAAAATGCATGCGACCCG
GGGCTAATTCAACGTTTTTGTGATCGCAAATAGATCGTTTTTTTTTTTTT
GGGGGGGGGGGTGAGCTCGTGAAGAGGGCGAACTCAATGTGGTGCTGTCG
TGTGCGTAACGAAAGCTCCTTCACTTTCCCCTACTACAGTAGGTCATATC
GCGTTGCTCAAATTGGAACTTTTGTTATCTGGCCGTCACGCTTTTCCAAA
GAATCTCTTCGCCGAGAGGTTCCGAATCCTGTTTGGAAACGGAGACCAAC
TATACCGCCCCTGCTATCACCAAAGACCGCCCCCCCTCCCGCTGCCGCAA
AACGAACGATATTTTGAAATTATACGTGTTTCAGAGAGTTCCATGCGTCT
ACCATCAGGCCGGGATGAAACTTATCCACACCGGAAATATTCCCTCTTCT
CCTCCCCGCGGTTCCTGGCTCTGAAACAGCTTGGTTTCAATTCCAACTTT
ATCCAATCCTAACGTGCCCACAACGCCACTGCCTCGGCGCTGCCGCCGGT
GCTGCGGCCTCAACACTCTTTCCACAATGGAACCAGGCCAGATGTAATGG
ACAGGCTGGCGGACCGGGTTGCAGCTGCTGTAGGAAAATGGGCAAGGCTT
GCATCTTCAGTGCAAAACTGAAGCCGGGCCCGAAGGGAGCAGGCGTATCA
AGCCTAAACACCCTTCGGAGCATTGCCCCTGCGGCGATCCAATCTCTACT
CGTGCACAGCAGCCCGGTGCCTTCCTCCTCGAGCGACGGGAGTGACGGGG
GCGACGGTATCGGCGACTTCGGCGACGCCAGCATCAGATTCGGCGGCGGC
AGCGGCAGCGACGGCTGCGGCGGTGGTAGTGGCGGCGGAGGGGCTGCTGC
AGGTGTTGGCCCTGGTTCCCCCGGTGGCGGCGGCGGTGGCGGCGGCAGTT
CCGGCAGTGGCCATGCTGCGGCCAAGACGGGAACGATGGACTTTAGCGGT
GGCGGCGGCGGCGGCAGCAGCAGCATCACAGAGCCACACTACAATGAGGT
GGGTAAAAAACATGTTGTGCAGTCTTGTGGTTATTGTCGTGGTTGGGCAC
GAGCTGTAGTCTGATGATGCGTGTTCTCGCATGGTGAACAATGACTTGTT
GCTGTTGCCTCGATTGCACGTTTCATGGGTGAAATTTTGGCTTCATGTTT
CGTCAACTTGTTTGCTTTGCACAACAATAGTCTAACATAGGGGGCAACGC
ATGCCGATAAAACGTGCTCAACCCAGAAAAAATGTGCTTGCTACACGACC
TGTCCCCATTCGCCTACACTTACTTGAAACCCTGTCCGCTGCGCCTTGGA
AAGACCCCTCTCTCCAAAGAGAAAGCCCATCGCATGCCCGGCGGCAAGTT
GCACCCACCCATATAGCGGCGCAAGCCACACAGCCAAATAACCACCACAG
CCCATTGCACCTAATTCCTCGCCAACATCGGGCCTCCGATCCTCTGCGAT
AAGGTCACCTGGAACGGGTTTAGTTTGATTGTTGCCATGCTAGTGAAGCC
AATGTGTTTTTTTCCACTCTCTCCACACGCACACCAACTCTGCCGTACTT
GTATGTCTGACGGTGCAGGGCCCCCAGCATACGCCGTCGAAGAGGTGCGG
CGAACCCCCCGCTGGAAAGACGACAGCGTGCGACGCGGGCCACCGCGCAA
AGCGCCAGAAGATTATCGACGGGACGGCACCGGAAACTCTCGTGGCGTCC
GCAACGACCCCTTCCCGTCGGCAAAAGCCGTGGGATGGGCGGCAGCTGCA
GCAGCTGTACGAGCAGGGGAAGAAGGAGCTGGGGCAGCTGCAGCAGGAGG
AGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9164:111..2865+

>mRNA_L-elsbetiae_contig9164.18189.1 ID=mRNA_L-elsbetiae_contig9164.18189.1|Name=mRNA_L-elsbetiae_contig9164.18189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig9164:111..2865+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTGTTCTGCGTAAGAACTGCGACTTGTGCGTCTCGAGGAAGATGAT
TGTTCTGCGTAAGAACTGCGACTTGTGCGTCTCGAGGAAGGCCAGATGTA
ATGGACAGGCTGGCGGACCGGGTTGCAGCTGCTGTAGGAAAATGGGCAAG
GCTTGCATCTTCAGTGCAAAACTGAAGCCGGGCCCGAAGGGAGCAGGCGT
ATCAAGCCTAAACACCCTTCGGAGCATTGCCCCTGCGGCGATCCAATCTC
TACTCGTGCACAGCAGCCCGGTGCCTTCCTCCTCGAGCGACGGGAGTGAC
GGGGGCGACGGTATCGGCGACTTCGGCGACGCCAGCATCAGATTCGGCGG
CGGCAGCGGCAGCGACGGCTGCGGCGGTGGTAGTGGCGGCGGAGGGGCTG
CTGCAGGTGTTGGCCCTGGTTCCCCCGGTGGCGGCGGCGGTGGCGGCGGC
AGTTCCGGCAGTGGCCATGCTGCGGCCAAGACGGGAACGATGGACTTTAG
CGGTGGCGGCGGCGGCGGCAGCAGCAGCATCACAGAGCCACACTACAATG
AGGCCAGATGTAATGGACAGGCTGGCGGACCGGGTTGCAGCTGCTGTAGG
AAAATGGGCAAGGCTTGCATCTTCAGTGCAAAACTGAAGCCGGGCCCGAA
GGGAGCAGGCGTATCAAGCCTAAACACCCTTCGGAGCATTGCCCCTGCGG
CGATCCAATCTCTACTCGTGCACAGCAGCCCGGTGCCTTCCTCCTCGAGC
GACGGGAGTGACGGGGGCGACGGTATCGGCGACTTCGGCGACGCCAGCAT
CAGATTCGGCGGCGGCAGCGGCAGCGACGGCTGCGGCGGTGGTAGTGGCG
GCGGAGGGGCTGCTGCAGGTGTTGGCCCTGGTTCCCCCGGTGGCGGCGGC
GGTGGCGGCGGCAGTTCCGGCAGTGGCCATGCTGCGGCCAAGACGGGAAC
GATGGACTTTAGCGGTGGCGGCGGCGGCGGCAGCAGCAGCATCACAGAGC
CACACTACAATGAGGGCCCCCAGCATACGCCGTCGAAGAGGTGCGGCGAA
CCCCCCGCTGGAAAGACGACAGCGTGCGACGCGGGCCACCGCGCAAAGCG
CCAGAAGATTATCGACGGGACGGCACCGGAAACTCTCGTGGCGTCCGCAA
CGACCCCTTCCCGTCGGCAAAAGCCGTGGGATGGGCGGCAGCTGCAGCAG
CTGTACGAGCAGGGGAAGAAGGAGCTGGGGCAGCTGCAGCAGGAGGAGAG
GGGCCCCCAGCATACGCCGTCGAAGAGGTGCGGCGAACCCCCCGCTGGAA
AGACGACAGCGTGCGACGCGGGCCACCGCGCAAAGCGCCAGAAGATTATC
GACGGGACGGCACCGGAAACTCTCGTGGCGTCCGCAACGACCCCTTCCCG
TCGGCAAAAGCCGTGGGATGGGCGGCAGCTGCAGCAGCTGTACGAGCAGG
GGAAGAAGGAGCTGGGGCAGCTGCAGCAGGAGGAGAGG
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