prot_L-elsbetiae_contig9.18004.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig9.18004.1
Unique Nameprot_L-elsbetiae_contig9.18004.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length555
Homology
BLAST of mRNA_L-elsbetiae_contig9.18004.1 vs. uniprot
Match: A0A6H5JP29_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP29_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 1.160e-90
Identity = 260/581 (44.75%), Postives = 330/581 (56.80%), Query Frame = 0
Query:    4 RGG--QANAEEEEGHQQEVLCLDERHATGAACLSGTRFLLTIFQLVDGSISVAGHDPLTCQTATLTLDLPATKALCQSEMLQMGPTGGPIGSVVAKHLMRNASRLLEVQTIGGVETLVVAGYNRADDESLASSTSSGGMMPRGFGMDSRTGSPRQVPQMSLVDNRSNGNTPNSSLGEAGRWAAGSSEALLPRMTPM--ALGQTGLMECRIRRLEVGRRRAEQARRVASSLRVARVAKEQRTMLLTCDAEALASSKSSYEALL--LTTQGAAQGSPEDGPSP------TAAGLGKVHILALRRRVVLELSAG-GESQRRRGSVQDIVDTIRRGSXXXXXXXXXLITEARERTLKRPVSXXXXXXXXXHAENGHRNDECEPSPHTGADVKKGA-----EENEHEA--GVKGDGVALLSPPDEKDDAGAPVLSIGSKQDEPRGEKKED--VLS--------GKAGGAGVNERK-PLAPQAASPQNGTSTEQQPLPQQKRQRPVT---PPQRETGLE-EGEDPSAALEGMLAAVAGLSQKVEQEGGPMGATAYAAWWL----------GAVSEAELELKKRFLTP 539
            RGG  Q N  ++    Q+ LCLDE H +GA C+SGTRFLLTI QLV+GSISV+GHDPLTCQTA LTLDLPA K LC SE L    TG PI SVVAKHLMRNA RLLEVQ++GG++T+ VAG N+ DD S+ASSTSSG  +P G+ ++S  G PRQ  Q    D  SN   P    G     A      L P+ T +  A  + GL+ CRIRRLE GRRRAE  RR AS  ++A VAKEQR MLLTCD +ALA +KSS+E+LL  L+ QGA   + ++G S        A  L K  IL LR RVV E S G G S+ RRGSVQ +V+ +RRGS   XXXXXX++ E  +RT  R  +            NG      +  P   A V  G      E+N+ E+   VK +  + ++ P  +  +G P +  G++   P G   E+  VL         G+ GGAG+   +    P+ A     T+TE++     KRQ   T   P +R++  E EGE     LE +L AV GLS++V++ GG                      GAVS+AELELKKRFL P
Sbjct: 2856 RGGERQENGRDKADGSQQYLCLDETHVSGAVCISGTRFLLTIAQLVNGSISVSGHDPLTCQTAALTLDLPALKTLCLSEGLPTASTGNPIRSVVAKHLMRNAPRLLEVQSVGGIDTMAVAGQNQGDDVSVASSTSSGIALPDGYRLESTGGLPRQQ-QAGHTDGGSN--RPAKVAGRTSNRAT-----LDPKTTSILTAASEPGLVACRIRRLEAGRRRAEGIRRAASVCKLATVAKEQREMLLTCDRQALALAKSSFESLLRSLSVQGARTSAAQNGGSTQETAPAVATCLDKDGILVLRERVVQEFSTGSGGSRNRRGSVQVVVEAVRRGSVQLXXXXXXMMAEVNKRTFNRSPTPGGSRVG-----NGTHGTAADAFPPVDAVVAAGGGDKEGEDNQDESLTAVKAEDQSAIASPPLRTCSGGPSID-GARVLSPPGNNNEEGVVLDETDGVSSRGENGGAGIGVAEVQQLPEGAPSLPETATEERLQVWPKRQGSETTLSPMKRDSAGEGEGETREVKLEELLGAVDGLSKRVKEGGGXXXXXXXXXXXXXXXXXXXXXXGAVSDAELELKKRFLAP 3422          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9.18004.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP29_9PHAE1.160e-9044.75AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9contigL-elsbetiae_contig9:61478..63727 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9.18004.1mRNA_L-elsbetiae_contig9.18004.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig9 61445..64127 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig9.18004.1 ID=prot_L-elsbetiae_contig9.18004.1|Name=mRNA_L-elsbetiae_contig9.18004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=555bp
MRPRGGQANAEEEEGHQQEVLCLDERHATGAACLSGTRFLLTIFQLVDGS
ISVAGHDPLTCQTATLTLDLPATKALCQSEMLQMGPTGGPIGSVVAKHLM
RNASRLLEVQTIGGVETLVVAGYNRADDESLASSTSSGGMMPRGFGMDSR
TGSPRQVPQMSLVDNRSNGNTPNSSLGEAGRWAAGSSEALLPRMTPMALG
QTGLMECRIRRLEVGRRRAEQARRVASSLRVARVAKEQRTMLLTCDAEAL
ASSKSSYEALLLTTQGAAQGSPEDGPSPTAAGLGKVHILALRRRVVLELS
AGGESQRRRGSVQDIVDTIRRGSTQLRRGSVQLITEARERTLKRPVSERT
LKRPVSHAENGHRNDECEPSPHTGADVKKGAEENEHEAGVKGDGVALLSP
PDEKDDAGAPVLSIGSKQDEPRGEKKEDVLSGKAGGAGVNERKPLAPQAA
SPQNGTSTEQQPLPQQKRQRPVTPPQRETGLEEGEDPSAALEGMLAAVAG
LSQKVEQEGGPMGATAYAAWWLGAVSEAELELKKRFLTPGPRGSLWSEEP
GDHK*
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