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Homology
BLAST of mRNA_L-elsbetiae_contig9.18004.1 vs. uniprot
Match: A0A6H5JP29_9PHAE (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP29_9PHAE) HSP 1 Score: 330 bits (846), Expect = 6.480e-94 Identity = 267/595 (44.87%), Postives = 340/595 (57.14%), Query Frame = 1
Query: 1 QVSRWVLSRLGMRPRGG--QANAEEEEGHQQEVLCLDERHATGAACLSGTRFLLTIFQLVDGSISVAGHDPLTCQTATLTLDLPATKALCQSEMLQMGPTGGPIGSVVAKHLMRNASRLLEVQTIGGVETLVVAGYNRADDESLASSTSSGGMMPRGFGMDSRTGSPRQVPQMSLVDNRSNGNTPNSSLGEAGRWAAGSSEALLPRMTPM--ALGQTGLMECRIRRLEVGRRRAEQARRVASSLRVARVAKEQRTMLLTCDAEALASSKSSYEALL--LTTQGAAQGSPEDGPSP------TAAGLGKVHILALRRRVVLELSAG-GESQRRRGSVQDIVDTIRRGSXXXXXXXXXLITEARERTLKRPVSXXXXXXXXXHAENGHRNDECEPSPHTGADVKKGA-----EENEHEA--GVKGDGVALLSPPDEKDDAGAPVLSIGSKQDEPRGEKKED--VLS--------GKAGGAGVNERK-PLAPQAASPQNGTSTEQQPLPQQKRQRPVT---PPQRETGLE-EGEDPSAALEGMLAAVAGLSQKVEQEGGPMGATAYAAWWL----------GAVSEAELELKKRFLTP 1650
+VS+WV+ RL M RGG Q N ++ Q+ LCLDE H +GA C+SGTRFLLTI QLV+GSISV+GHDPLTCQTA LTLDLPA K LC SE L TG PI SVVAKHLMRNA RLLEVQ++GG++T+ VAG N+ DD S+ASSTSSG +P G+ ++S G PRQ Q D SN P G A L P+ T + A + GL+ CRIRRLE GRRRAE RR AS ++A VAKEQR MLLTCD +ALA +KSS+E+LL L+ QGA + ++G S A L K IL LR RVV E S G G S+ RRGSVQ +V+ +RRGS XXXXXX++ E +RT R + NG + P A V G E+N+ E+ VK + + ++ P + +G P + G++ P G E+ VL G+ GGAG+ + P+ A T+TE++ KRQ T P +R++ E EGE LE +L AV GLS++V++ GG GAVS+AELELKKRFL P
Sbjct: 2842 KVSQWVMGRLKMDIRGGERQENGRDKADGSQQYLCLDETHVSGAVCISGTRFLLTIAQLVNGSISVSGHDPLTCQTAALTLDLPALKTLCLSEGLPTASTGNPIRSVVAKHLMRNAPRLLEVQSVGGIDTMAVAGQNQGDDVSVASSTSSGIALPDGYRLESTGGLPRQQ-QAGHTDGGSN--RPAKVAGRTSNRAT-----LDPKTTSILTAASEPGLVACRIRRLEAGRRRAEGIRRAASVCKLATVAKEQREMLLTCDRQALALAKSSFESLLRSLSVQGARTSAAQNGGSTQETAPAVATCLDKDGILVLRERVVQEFSTGSGGSRNRRGSVQVVVEAVRRGSVQLXXXXXXMMAEVNKRTFNRSPTPGGSRVG-----NGTHGTAADAFPPVDAVVAAGGGDKEGEDNQDESLTAVKAEDQSAIASPPLRTCSGGPSID-GARVLSPPGNNNEEGVVLDETDGVSSRGENGGAGIGVAEVQQLPEGAPSLPETATEERLQVWPKRQGSETTLSPMKRDSAGEGEGETREVKLEELLGAVDGLSKRVKEGGGXXXXXXXXXXXXXXXXXXXXXXGAVSDAELELKKRFLAP 3422
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 2098 |
| Cds size | 1665 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816974.652261-UTR-L-elsbetiae_contig9:61444..61477 | 1622816974.652261-UTR-L-elsbetiae_contig9:61444..61477 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9 61445..61477 + |
| 1691683953.6869235-UTR-L-elsbetiae_contig9:61444..61477 | 1691683953.6869235-UTR-L-elsbetiae_contig9:61444..61477 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9 61445..61477 + |
| 1622816974.6978471-UTR-L-elsbetiae_contig9:63727..64127 | 1622816974.6978471-UTR-L-elsbetiae_contig9:63727..64127 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9 63728..64127 + |
| 1691683953.736081-UTR-L-elsbetiae_contig9:63727..64127 | 1691683953.736081-UTR-L-elsbetiae_contig9:63727..64127 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig9 63728..64127 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816974.664937-CDS-L-elsbetiae_contig9:61477..61590 | 1622816974.664937-CDS-L-elsbetiae_contig9:61477..61590 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9 61478..61590 + |
| 1691683953.701089-CDS-L-elsbetiae_contig9:61477..61590 | 1691683953.701089-CDS-L-elsbetiae_contig9:61477..61590 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9 61478..61590 + |
| 1622816974.6750479-CDS-L-elsbetiae_contig9:61980..62157 | 1622816974.6750479-CDS-L-elsbetiae_contig9:61980..62157 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9 61981..62157 + |
| 1691683953.7133253-CDS-L-elsbetiae_contig9:61980..62157 | 1691683953.7133253-CDS-L-elsbetiae_contig9:61980..62157 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9 61981..62157 + |
| 1622816974.687106-CDS-L-elsbetiae_contig9:62352..63727 | 1622816974.687106-CDS-L-elsbetiae_contig9:62352..63727 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9 62353..63727 + |
| 1691683953.7245543-CDS-L-elsbetiae_contig9:62352..63727 | 1691683953.7245543-CDS-L-elsbetiae_contig9:62352..63727 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig9 62353..63727 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9.18004.1 >prot_L-elsbetiae_contig9.18004.1 ID=prot_L-elsbetiae_contig9.18004.1|Name=mRNA_L-elsbetiae_contig9.18004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=555bp
MRPRGGQANAEEEEGHQQEVLCLDERHATGAACLSGTRFLLTIFQLVDGS
ISVAGHDPLTCQTATLTLDLPATKALCQSEMLQMGPTGGPIGSVVAKHLM
RNASRLLEVQTIGGVETLVVAGYNRADDESLASSTSSGGMMPRGFGMDSR
TGSPRQVPQMSLVDNRSNGNTPNSSLGEAGRWAAGSSEALLPRMTPMALG
QTGLMECRIRRLEVGRRRAEQARRVASSLRVARVAKEQRTMLLTCDAEAL
ASSKSSYEALLLTTQGAAQGSPEDGPSPTAAGLGKVHILALRRRVVLELS
AGGESQRRRGSVQDIVDTIRRGSTQLRRGSVQLITEARERTLKRPVSERT
LKRPVSHAENGHRNDECEPSPHTGADVKKGAEENEHEAGVKGDGVALLSP
PDEKDDAGAPVLSIGSKQDEPRGEKKEDVLSGKAGGAGVNERKPLAPQAA
SPQNGTSTEQQPLPQQKRQRPVTPPQRETGLEEGEDPSAALEGMLAAVAG
LSQKVEQEGGPMGATAYAAWWLGAVSEAELELKKRFLTPGPRGSLWSEEP
GDHK* back to topmRNA from alignment at L-elsbetiae_contig9:61445..64127+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig9.18004.1 ID=mRNA_L-elsbetiae_contig9.18004.1|Name=mRNA_L-elsbetiae_contig9.18004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2683bp|location=Sequence derived from alignment at L-elsbetiae_contig9:61445..64127+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGTCACGATGGGTGTTGAGTCGCCTGGGGATGAGACCTCGAGGAGG
ACAAGCAAACGCCGAAGAGGAAGAGGGGCATCAGCAAGAAGTGCTGTGTC
TCGACGAAAGGCATGCCACGGGCGCAGCCTGCCTTTCGGGAACCAGGTGA
GGTGATAAACAAGAAAATTAGATCAGCCCAGTGATGTTTTACACAATGGC
GGCTGCCCGACGAGAAGTCGGCCACCGTTCCATCGGTCGCCCGCTTCATG
CTTGATAGCTGGTGGTATGTTTTGGTTGTCGTCAGATGTTGTTGGCGTCC
CATGTACCACTTCAACGCTCCATCCCCCAGCACAGTTTAGGGGTAACACG
TCACGCTGGCAAGGGTTCCGTATTTTCCATCTTCCCCTTGCCCAACCCGG
CGAACGCACGTCAGCATCGCCCCCCCCTTTTTTCTCAACCTCTATGAATA
ACAACTAACAACTTATTTTTTCTGGAGAGCGATCCACTTCTCCTGCGCTG
ATCCACCCCCCCTCTCAAACACGCGCGACAACATAGGTTTCTGTTAACGA
TCTTCCAACTCGTGGACGGATCAATATCCGTGGCGGGTCACGATCCTCTA
ACGTGCCAGACAGCTACGCTTACGCTCGACCTGCCTGCGACAAAGGCTTT
GTGCCAGTCAGAAATGCTTCAAATGGGACCCACGGGGGGGCCGATCGGAT
CGGTCGTCGCCAAGTAAGTCAACGCAACCACAGCATTCTCACGAACTGGC
GATGAGGTGTTGAAAAAGAGTCCAAATAAGTAGCCATTATCCGCTAGATG
ACCGGCACACTTCCACTGAAAGTGAAAACACATTTTACTGAGCACAACTA
TCAAACGCACGCACGCACGCACTCCGCCCACCCCCCAAAAACGCTCTACC
ATTGCCAGGCACCTCATGCGAAACGCTTCGCGTCTTCTCGAAGTGCAGAC
CATCGGCGGCGTCGAAACCCTGGTCGTTGCCGGTTACAACCGAGCAGACG
ACGAGTCTCTGGCTTCTTCCACGTCGTCGGGCGGGATGATGCCACGCGGG
TTCGGAATGGATTCCAGAACAGGCTCCCCGCGACAAGTGCCACAAATGAG
CCTTGTCGACAACAGAAGCAACGGCAACACACCCAACAGCAGTCTCGGAG
AAGCAGGACGATGGGCCGCCGGTTCATCTGAAGCCCTACTCCCGAGAATG
ACTCCGATGGCTCTTGGTCAAACAGGACTCATGGAGTGCCGAATACGCCG
GCTGGAGGTGGGTAGGAGGCGTGCCGAGCAGGCCAGGAGGGTCGCGTCCT
CGCTGAGGGTCGCGAGGGTCGCCAAGGAGCAGCGGACGATGCTGCTTACG
TGCGACGCGGAGGCTCTGGCGTCGTCGAAATCGTCCTACGAGGCGCTGTT
GTTGACCACCCAGGGAGCGGCACAAGGGTCACCAGAAGACGGGCCATCTC
CAACGGCGGCAGGTCTAGGGAAGGTACACATTCTCGCGCTTCGGCGTAGG
GTTGTGCTCGAGCTGTCCGCTGGGGGAGAATCTCAGAGACGGAGAGGGAG
CGTTCAGGATATTGTTGACACTATACGAAGAGGGAGTACTCAGCTCCGAA
GAGGGAGTGTCCAGCTGATAACGGAGGCCAGGGAGCGCACGCTTAAGCGC
CCGGTTTCAGAGCGCACGCTTAAACGCCCCGTTTCACACGCCGAGAACGG
ACATCGTAACGACGAGTGCGAGCCTTCTCCCCACACTGGTGCCGACGTCA
AGAAGGGGGCCGAAGAAAATGAGCATGAGGCTGGGGTGAAGGGGGACGGC
GTGGCGCTTCTCTCTCCTCCTGACGAGAAAGATGATGCAGGTGCTCCCGT
TCTGAGCATTGGTTCAAAGCAGGATGAGCCGCGCGGCGAAAAAAAAGAAG
ACGTCTTGAGCGGCAAAGCGGGTGGGGCAGGTGTAAACGAGAGAAAGCCT
CTTGCGCCACAAGCGGCTTCGCCACAAAACGGGACATCGACAGAGCAGCA
GCCGCTACCCCAACAGAAGCGACAACGACCTGTGACGCCACCCCAAAGAG
AAACGGGGCTTGAAGAGGGGGAAGACCCTTCCGCTGCGCTCGAGGGGATG
CTGGCTGCCGTGGCCGGTCTCTCCCAGAAAGTGGAACAAGAGGGGGGACC
CATGGGGGCGACTGCATATGCGGCTTGGTGGTTAGGAGCTGTTTCGGAAG
CCGAGTTAGAGCTCAAGAAGAGATTCTTGACCCCAGGTCCCAGGGGAAGT
TTGTGGTCGGAGGAACCGGGTGATCATAAATAGGGCAGAGCAGGTTTTGT
TACGTGTTGTACGGCTATTGTACAGGATACATACGAAGGAATACCGTATG
GTGCTTGTTTTGGGGACATCGGCTGTTCGGACTACAGGACGGCGTGGTGC
GGAGAGGGTTGCCGAAAAGCTTAAAGAGCACATTATTTCCGTTATTTGTC
TAGATATCGCCCCCCCAAAAATAGTATATACAAGTAGATAACCCTGCTCA
AAGTTGTCATTTTACTCAAGCCCATGAGTGCTTTTGTCCGGGATTTCTTC
GACCTGGGCATTCGCCGCCGGCTGATATTGGATTTCCCACCGTAAATCTT
AGTTCCCGCAGCAAGGGATATGGTATAATATAAGCAGGCGCTTCGCATGC
ATTGAAAAAATATAAAACAGTTTTGCTTCTCGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig9:61445..64127+ >mRNA_L-elsbetiae_contig9.18004.1 ID=mRNA_L-elsbetiae_contig9.18004.1|Name=mRNA_L-elsbetiae_contig9.18004.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3330bp|location=Sequence derived from alignment at L-elsbetiae_contig9:61445..64127+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGACCTCGAGGAGGACAAGCAAACGCCGAAGAGGAAGAGGGGCATCA
GCAAGAAGTGCTGTGTCTCGACGAAAGGCATGCCACGGGCGCAGCCTGCC
TTTCGGGAACCAGATGAGACCTCGAGGAGGACAAGCAAACGCCGAAGAGG
AAGAGGGGCATCAGCAAGAAGTGCTGTGTCTCGACGAAAGGCATGCCACG
GGCGCAGCCTGCCTTTCGGGAACCAGGTTTCTGTTAACGATCTTCCAACT
CGTGGACGGATCAATATCCGTGGCGGGTCACGATCCTCTAACGTGCCAGA
CAGCTACGCTTACGCTCGACCTGCCTGCGACAAAGGCTTTGTGCCAGTCA
GAAATGCTTCAAATGGGACCCACGGGGGGGCCGATCGGATCGGTCGTCGC
CAAGTTTCTGTTAACGATCTTCCAACTCGTGGACGGATCAATATCCGTGG
CGGGTCACGATCCTCTAACGTGCCAGACAGCTACGCTTACGCTCGACCTG
CCTGCGACAAAGGCTTTGTGCCAGTCAGAAATGCTTCAAATGGGACCCAC
GGGGGGGCCGATCGGATCGGTCGTCGCCAAGCACCTCATGCGAAACGCTT
CGCGTCTTCTCGAAGTGCAGACCATCGGCGGCGTCGAAACCCTGGTCGTT
GCCGGTTACAACCGAGCAGACGACGAGTCTCTGGCTTCTTCCACGTCGTC
GGGCGGGATGATGCCACGCGGGTTCGGAATGGATTCCAGAACAGGCTCCC
CGCGACAAGTGCCACAAATGAGCCTTGTCGACAACAGAAGCAACGGCAAC
ACACCCAACAGCAGTCTCGGAGAAGCAGGACGATGGGCCGCCGGTTCATC
TGAAGCCCTACTCCCGAGAATGACTCCGATGGCTCTTGGTCAAACAGGAC
TCATGGAGTGCCGAATACGCCGGCTGGAGGTGGGTAGGAGGCGTGCCGAG
CAGGCCAGGAGGGTCGCGTCCTCGCTGAGGGTCGCGAGGGTCGCCAAGGA
GCAGCGGACGATGCTGCTTACGTGCGACGCGGAGGCTCTGGCGTCGTCGA
AATCGTCCTACGAGGCGCTGTTGTTGACCACCCAGGGAGCGGCACAAGGG
TCACCAGAAGACGGGCCATCTCCAACGGCGGCAGGTCTAGGGAAGGTACA
CATTCTCGCGCTTCGGCGTAGGGTTGTGCTCGAGCTGTCCGCTGGGGGAG
AATCTCAGAGACGGAGAGGGAGCGTTCAGGATATTGTTGACACTATACGA
AGAGGGAGTACTCAGCTCCGAAGAGGGAGTGTCCAGCTGATAACGGAGGC
CAGGGAGCGCACGCTTAAGCGCCCGGTTTCAGAGCGCACGCTTAAACGCC
CCGTTTCACACGCCGAGAACGGACATCGTAACGACGAGTGCGAGCCTTCT
CCCCACACTGGTGCCGACGTCAAGAAGGGGGCCGAAGAAAATGAGCATGA
GGCTGGGGTGAAGGGGGACGGCGTGGCGCTTCTCTCTCCTCCTGACGAGA
AAGATGATGCAGGTGCTCCCGTTCTGAGCATTGGTTCAAAGCAGGATGAG
CCGCGCGGCGAAAAAAAAGAAGACGTCTTGAGCGGCAAAGCGGGTGGGGC
AGGTGTAAACGAGAGAAAGCCTCTTGCGCCACAAGCGGCTTCGCCACAAA
ACGGGACATCGACAGAGCAGCAGCCGCTACCCCAACAGAAGCGACAACGA
CCTGTGACGCCACCCCAAAGAGAAACGGGGCTTGAAGAGGGGGAAGACCC
TTCCGCTGCGCTCGAGGGGATGCTGGCTGCCGTGGCCGGTCTCTCCCAGA
AAGTGGAACAAGAGGGGGGACCCATGGGGGCGACTGCATATGCGGCTTGG
TGGTTAGGAGCTGTTTCGGAAGCCGAGTTAGAGCTCAAGAAGAGATTCTT
GACCCCAGGTCCCAGGGGAAGTTTGTGGTCGGAGGAACCGGGTGATCATA
AATAGGCACCTCATGCGAAACGCTTCGCGTCTTCTCGAAGTGCAGACCAT
CGGCGGCGTCGAAACCCTGGTCGTTGCCGGTTACAACCGAGCAGACGACG
AGTCTCTGGCTTCTTCCACGTCGTCGGGCGGGATGATGCCACGCGGGTTC
GGAATGGATTCCAGAACAGGCTCCCCGCGACAAGTGCCACAAATGAGCCT
TGTCGACAACAGAAGCAACGGCAACACACCCAACAGCAGTCTCGGAGAAG
CAGGACGATGGGCCGCCGGTTCATCTGAAGCCCTACTCCCGAGAATGACT
CCGATGGCTCTTGGTCAAACAGGACTCATGGAGTGCCGAATACGCCGGCT
GGAGGTGGGTAGGAGGCGTGCCGAGCAGGCCAGGAGGGTCGCGTCCTCGC
TGAGGGTCGCGAGGGTCGCCAAGGAGCAGCGGACGATGCTGCTTACGTGC
GACGCGGAGGCTCTGGCGTCGTCGAAATCGTCCTACGAGGCGCTGTTGTT
GACCACCCAGGGAGCGGCACAAGGGTCACCAGAAGACGGGCCATCTCCAA
CGGCGGCAGGTCTAGGGAAGGTACACATTCTCGCGCTTCGGCGTAGGGTT
GTGCTCGAGCTGTCCGCTGGGGGAGAATCTCAGAGACGGAGAGGGAGCGT
TCAGGATATTGTTGACACTATACGAAGAGGGAGTACTCAGCTCCGAAGAG
GGAGTGTCCAGCTGATAACGGAGGCCAGGGAGCGCACGCTTAAGCGCCCG
GTTTCAGAGCGCACGCTTAAACGCCCCGTTTCACACGCCGAGAACGGACA
TCGTAACGACGAGTGCGAGCCTTCTCCCCACACTGGTGCCGACGTCAAGA
AGGGGGCCGAAGAAAATGAGCATGAGGCTGGGGTGAAGGGGGACGGCGTG
GCGCTTCTCTCTCCTCCTGACGAGAAAGATGATGCAGGTGCTCCCGTTCT
GAGCATTGGTTCAAAGCAGGATGAGCCGCGCGGCGAAAAAAAAGAAGACG
TCTTGAGCGGCAAAGCGGGTGGGGCAGGTGTAAACGAGAGAAAGCCTCTT
GCGCCACAAGCGGCTTCGCCACAAAACGGGACATCGACAGAGCAGCAGCC
GCTACCCCAACAGAAGCGACAACGACCTGTGACGCCACCCCAAAGAGAAA
CGGGGCTTGAAGAGGGGGAAGACCCTTCCGCTGCGCTCGAGGGGATGCTG
GCTGCCGTGGCCGGTCTCTCCCAGAAAGTGGAACAAGAGGGGGGACCCAT
GGGGGCGACTGCATATGCGGCTTGGTGGTTAGGAGCTGTTTCGGAAGCCG
AGTTAGAGCTCAAGAAGAGATTCTTGACCCCAGGTCCCAGGGGAAGTTTG
TGGTCGGAGGAACCGGGTGATCATAAATAG back to top
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