prot_L-elsbetiae_contig899.17989.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig899.17989.1
Unique Nameprot_L-elsbetiae_contig899.17989.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length248
Homology
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BLAST of mRNA_L-elsbetiae_contig899.17989.1 vs. uniprot
Match: D8LSU4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU4_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 7.530e-51
Identity = 142/256 (55.47%), Postives = 161/256 (62.89%), Query Frame = 0 
Query:    1 MFRLWALLTSTLSR---SLEDAASPSPLPLPSELAFP-LLLLPFLRSSNSMLRLLADHDVYRINEDWGGLEFDQLRAFSASLIRLASADIAGRNGG--GGDIADGGSAXXXXXTAMVVSRDGSRAAEGAPDXXXXXXXSSLGQESGEGISAGAA-QEFLRAFSSLLGLNHNILHDDLRPVLRMTFDWAATAEAGTAAAVVPPTSGDTAGNSGXXXXXXXXXXXXXDDGGVPG-LRAVAIGLVVSLVDTYGRLRQMD 248
            MFRLW++L STL     S+  +           +  P LLLLPFLRSSNSMLR LA+HDVYRINEDWGGLEFDQLR+FS+SLIRLA +   GR G   GGD +  G A      AM VS DG+R  E  PD         +     +   AGAA +EFLRAF SLLGLNH+ILHDDLRPVLRMTF+WAATAE             +      XXXXXXXXXXXXX     P  LRA+A+ LV SLV TYGRLRQMD
Sbjct:  577 MFRLWSVLNSTLLGYLPSVPPSXXXXXXXXDGTVVLPRLLLLPFLRSSNSMLRFLAEHDVYRINEDWGGLEFDQLRSFSSSLIRLADS-CYGRGGSRAGGDNSTDGGAPGSTAAAMAVSGDGARRREDTPDAPAAAARVLVKPTKEQAAGAGAAAEEFLRAFGSLLGLNHSILHDDLRPVLRMTFEWAATAET------------EEXXXXXXXXXXXXXXXXXXXXXXPPAVLRALAVDLVASLVGTYGRLRQMD 819
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BLAST of mRNA_L-elsbetiae_contig899.17989.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.450e-50
Identity = 132/248 (53.23%), Postives = 147/248 (59.27%), Query Frame = 0 
Query:    1 MFRLWALLTSTLSRSLEDAASPSPLPL-PSE--LAFP-LLLLPFLRSSNSMLRLLADHDVYRINEDWGGLEFDQLRAFSASLIRLA-SADIAGRNGGGGDIADGGSAXXXXXTAMVVSRDGSRAAEGAPDXXXXXXXSSLGQESGEGISAGAA-QEFLRAFSSLLGLNHNILHDDLRPVLRMTFDWAATAEAGTAAAVVPPTSGDTAGNSGXXXXXXXXXXXXXDDGGVPGLRAVAIGLVVSLVDTYG 242
            MFRLW++L STL  SL  A S SP P  PS+  +  P LLLLPFLRSSNSMLRLLA+HDVYRINEDWGGLEF QLR+FS+SLIRLA S                  A      AM VSRDG+R  E APD         +     E   AGAA +EFLRAF SLLGLNH+ILHDDLR VLRMTF+WAATAE   +A   P T     G SG               G    LRA+A+ LV SLV T G
Sbjct:  623 MFRLWSVLHSTLLGSLPSAPSSSPPPAQPSDGTVVLPRLLLLPFLRSSNSMLRLLAEHDVYRINEDWGGLEFGQLRSFSSSLIRLAESCXXXXXXXXXXXXXXXXXAPASTPAAMAVSRDGARRTEDAPDAPAAAARVLVKPTKEEVTGAGAAAEEFLRAFGSLLGLNHSILHDDLRQVLRMTFEWAATAETAESATAAPGTVRGGDGGSG---------------GPTVVLRALAVDLVASLVGTGG 855
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig899.17989.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSU4_ECTSI7.530e-5155.47Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JIT9_9PHAE1.450e-5053.23Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..248
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..15
score: 0.49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig899contigL-elsbetiae_contig899:14241..14984 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig899.17989.1mRNA_L-elsbetiae_contig899.17989.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig899 14212..14984 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig899.17989.1 ID=prot_L-elsbetiae_contig899.17989.1|Name=mRNA_L-elsbetiae_contig899.17989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
MFRLWALLTSTLSRSLEDAASPSPLPLPSELAFPLLLLPFLRSSNSMLRL
LADHDVYRINEDWGGLEFDQLRAFSASLIRLASADIAGRNGGGGDIADGG
SAGAAAATAMVVSRDGSRAAEGAPDAAAASAASSLGQESGEGISAGAAQE
FLRAFSSLLGLNHNILHDDLRPVLRMTFDWAATAEAGTAAAVVPPTSGDT
AGNSGSGDTAGNGGGGGDDDGGVPGLRAVAIGLVVSLVDTYGRLRQMD
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