mRNA_L-elsbetiae_contig899.17989.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig899.17989.1
Unique NamemRNA_L-elsbetiae_contig899.17989.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig899.17989.1 vs. uniprot
Match: D8LSU4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU4_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 8.520e-54
Identity = 147/261 (56.32%), Postives = 166/261 (63.60%), Query Frame = 3 
Query:   15 SPASQMFRLWALLTSTLSR---SLEDAASPSPLPLPSELAFP-LLLLPFLRSSNSMLRLLADHDVYRINEDWGGLEFDQLRAFSASLIRLASADIAGRNGG--GGDIADGGSAXXXXXTAMVVSRDGSRAAEGAPDXXXXXXXSSLGQESGEGISAGAA-QEFLRAFSSLLGLNHNILHDDLRPVLRMTFDWAATAEAGTAAAVVPPTSGDTAGNSGXXXXXXXXXXXXXDDGGVPG-LRAVAIGLVVSLVDTYGRLRQMD 773
            SPASQMFRLW++L STL     S+  +           +  P LLLLPFLRSSNSMLR LA+HDVYRINEDWGGLEFDQLR+FS+SLIRLA +   GR G   GGD +  G A      AM VS DG+R  E  PD         +     +   AGAA +EFLRAF SLLGLNH+ILHDDLRPVLRMTF+WAATAE             +      XXXXXXXXXXXXX     P  LRA+A+ LV SLV TYGRLRQMD
Sbjct:  572 SPASQMFRLWSVLNSTLLGYLPSVPPSXXXXXXXXDGTVVLPRLLLLPFLRSSNSMLRFLAEHDVYRINEDWGGLEFDQLRSFSSSLIRLADS-CYGRGGSRAGGDNSTDGGAPGSTAAAMAVSGDGARRREDTPDAPAAAARVLVKPTKEQAAGAGAAAEEFLRAFGSLLGLNHSILHDDLRPVLRMTFEWAATAET------------EEXXXXXXXXXXXXXXXXXXXXXXPPAVLRALAVDLVASLVGTYGRLRQMD 819
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BLAST of mRNA_L-elsbetiae_contig899.17989.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.650e-53
Identity = 137/253 (54.15%), Postives = 152/253 (60.08%), Query Frame = 3 
Query:   15 SPASQMFRLWALLTSTLSRSLEDAASPSPLPL-PSE--LAFP-LLLLPFLRSSNSMLRLLADHDVYRINEDWGGLEFDQLRAFSASLIRLA-SADIAGRNGGGGDIADGGSAXXXXXTAMVVSRDGSRAAEGAPDXXXXXXXSSLGQESGEGISAGAA-QEFLRAFSSLLGLNHNILHDDLRPVLRMTFDWAATAEAGTAAAVVPPTSGDTAGNSGXXXXXXXXXXXXXDDGGVPGLRAVAIGLVVSLVDTYG 755
            SPASQMFRLW++L STL  SL  A S SP P  PS+  +  P LLLLPFLRSSNSMLRLLA+HDVYRINEDWGGLEF QLR+FS+SLIRLA S                  A      AM VSRDG+R  E APD         +     E   AGAA +EFLRAF SLLGLNH+ILHDDLR VLRMTF+WAATAE   +A   P T     G SG               G    LRA+A+ LV SLV T G
Sbjct:  618 SPASQMFRLWSVLHSTLLGSLPSAPSSSPPPAQPSDGTVVLPRLLLLPFLRSSNSMLRLLAEHDVYRINEDWGGLEFGQLRSFSSSLIRLAESCXXXXXXXXXXXXXXXXXAPASTPAAMAVSRDGARRTEDAPDAPAAAARVLVKPTKEEVTGAGAAAEEFLRAFGSLLGLNHSILHDDLRQVLRMTFEWAATAETAESATAAPGTVRGGDGGSG---------------GPTVVLRALAVDLVASLVGTGG 855
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig899.17989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSU4_ECTSI8.520e-5456.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JIT9_9PHAE1.650e-5354.15Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig899contigL-elsbetiae_contig899:14212..14984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009970.1
Exons1
Model size773
Cds size744
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816973.085565-UTR-L-elsbetiae_contig899:14211..142401622816973.085565-UTR-L-elsbetiae_contig899:14211..14240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig899 14212..14240 +
1691683952.5022502-UTR-L-elsbetiae_contig899:14211..142401691683952.5022502-UTR-L-elsbetiae_contig899:14211..14240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig899 14212..14240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816973.095925-CDS-L-elsbetiae_contig899:14240..149841622816973.095925-CDS-L-elsbetiae_contig899:14240..14984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig899 14241..14984 +
1691683952.5115006-CDS-L-elsbetiae_contig899:14240..149841691683952.5115006-CDS-L-elsbetiae_contig899:14240..14984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig899 14241..14984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig899.17989.1prot_L-elsbetiae_contig899.17989.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig899 14241..14984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig899.17989.1

>prot_L-elsbetiae_contig899.17989.1 ID=prot_L-elsbetiae_contig899.17989.1|Name=mRNA_L-elsbetiae_contig899.17989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp
MFRLWALLTSTLSRSLEDAASPSPLPLPSELAFPLLLLPFLRSSNSMLRL
LADHDVYRINEDWGGLEFDQLRAFSASLIRLASADIAGRNGGGGDIADGG
SAGAAAATAMVVSRDGSRAAEGAPDAAAASAASSLGQESGEGISAGAAQE
FLRAFSSLLGLNHNILHDDLRPVLRMTFDWAATAEAGTAAAVVPPTSGDT
AGNSGSGDTAGNGGGGGDDDGGVPGLRAVAIGLVVSLVDTYGRLRQMD
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mRNA from alignment at L-elsbetiae_contig899:14212..14984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig899.17989.1 ID=mRNA_L-elsbetiae_contig899.17989.1|Name=mRNA_L-elsbetiae_contig899.17989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=773bp|location=Sequence derived from alignment at L-elsbetiae_contig899:14212..14984+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCTCCTCCCCGTCGCCGGCGTCGCAGATGTTCAGGCTGTGGGCCTTG
TTGACTTCGACGCTCTCCCGGTCCTTGGAAGATGCAGCGTCGCCTTCGCC
GTTGCCGTTACCGTCTGAGCTTGCGTTTCCGCTGCTGCTGCTTCCGTTCT
TGCGATCAAGCAACTCAATGCTGAGGCTCCTCGCCGACCACGACGTGTAC
CGAATCAATGAGGACTGGGGAGGGCTGGAGTTCGACCAGCTGCGGGCTTT
CTCTGCCAGTCTTATCCGCCTGGCCAGCGCGGATATCGCCGGTAGAAACG
GCGGCGGCGGCGACATCGCTGATGGGGGGAGTGCTGGTGCCGCCGCTGCT
ACGGCGATGGTGGTCAGCAGGGACGGAAGCAGAGCAGCGGAGGGTGCTCC
CGATGCGGCTGCCGCCAGCGCCGCCAGTAGTCTTGGTCAGGAGAGCGGGG
AGGGGATCTCGGCTGGAGCGGCGCAGGAGTTCCTGAGGGCCTTCAGCTCG
CTGCTAGGCCTGAACCACAACATCCTGCACGACGACTTGAGGCCGGTGCT
GCGGATGACGTTCGATTGGGCGGCGACTGCAGAAGCTGGAACGGCGGCAG
CGGTGGTGCCCCCCACCAGCGGCGACACCGCGGGTAACAGCGGCAGCGGC
GACACCGCCGGTAACGGCGGCGGCGGCGGCGACGACGACGGCGGTGTGCC
GGGGCTGCGCGCCGTCGCGATCGGGCTCGTCGTCAGCCTGGTGGACACCT
ACGGCCGGCTGAGGCAGATGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig899:14212..14984+

>mRNA_L-elsbetiae_contig899.17989.1 ID=mRNA_L-elsbetiae_contig899.17989.1|Name=mRNA_L-elsbetiae_contig899.17989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig899:14212..14984+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCAGGCTGTGGGCCTTGTTGACTTCGACGCTCTCCCGGTCCTTGGA
AGATGCAGCGTCGCCTTCGCCGTTGCCGTTACCGTCTGAGCTTGCGTTTC
CGCTGCTGCTGCTTCCGTTCTTGCGATCAAGCAACTCAATGCTGAGGCTC
CTCGCCGACCACGACGTGTACCGAATCAATGAGGACTGGGGAGGGCTGGA
GTTCGACCAGCTGCGGGCTTTCTCTGCCAGTCTTATCCGCCTGGCCAGCG
CGGATATCGCCGGTAGAAACGGCGGCGGCGGCGACATCGCTGATGGGGGG
AGTGCTGGTGCCGCCGCTGCTACGGCGATGGTGGTCAGCAGGGACGGAAG
CAGAGCAGCGGAGGGTGCTCCCGATGCGGCTGCCGCCAGCGCCGCCAGTA
GTCTTGGTCAGGAGAGCGGGGAGGGGATCTCGGCTGGAGCGGCGCAGGAG
TTCCTGAGGGCCTTCAGCTCGCTGCTAGGCCTGAACCACAACATCCTGCA
CGACGACTTGAGGCCGGTGCTGCGGATGACGTTCGATTGGGCGGCGACTG
CAGAAGCTGGAACGGCGGCAGCGGTGGTGCCCCCCACCAGCGGCGACACC
GCGGGTAACAGCGGCAGCGGCGACACCGCCGGTAACGGCGGCGGCGGCGG
CGACGACGACGGCGGTGTGCCGGGGCTGCGCGCCGTCGCGATCGGGCTCG
TCGTCAGCCTGGTGGACACCTACGGCCGGCTGAGGCAGATGGACATGTTC
AGGCTGTGGGCCTTGTTGACTTCGACGCTCTCCCGGTCCTTGGAAGATGC
AGCGTCGCCTTCGCCGTTGCCGTTACCGTCTGAGCTTGCGTTTCCGCTGC
TGCTGCTTCCGTTCTTGCGATCAAGCAACTCAATGCTGAGGCTCCTCGCC
GACCACGACGTGTACCGAATCAATGAGGACTGGGGAGGGCTGGAGTTCGA
CCAGCTGCGGGCTTTCTCTGCCAGTCTTATCCGCCTGGCCAGCGCGGATA
TCGCCGGTAGAAACGGCGGCGGCGGCGACATCGCTGATGGGGGGAGTGCT
GGTGCCGCCGCTGCTACGGCGATGGTGGTCAGCAGGGACGGAAGCAGAGC
AGCGGAGGGTGCTCCCGATGCGGCTGCCGCCAGCGCCGCCAGTAGTCTTG
GTCAGGAGAGCGGGGAGGGGATCTCGGCTGGAGCGGCGCAGGAGTTCCTG
AGGGCCTTCAGCTCGCTGCTAGGCCTGAACCACAACATCCTGCACGACGA
CTTGAGGCCGGTGCTGCGGATGACGTTCGATTGGGCGGCGACTGCAGAAG
CTGGAACGGCGGCAGCGGTGGTGCCCCCCACCAGCGGCGACACCGCGGGT
AACAGCGGCAGCGGCGACACCGCCGGTAACGGCGGCGGCGGCGGCGACGA
CGACGGCGGTGTGCCGGGGCTGCGCGCCGTCGCGATCGGGCTCGTCGTCA
GCCTGGTGGACACCTACGGCCGGCTGAGGCAGATGGAC
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