prot_L-elsbetiae_contig893.17944.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig893.17944.1
Unique Name	prot_L-elsbetiae_contig893.17944.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	281

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig893.17944.1 vs. uniprot
Match: D7G341_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G341_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.720e-25
Identity = 96/264 (36.36%), Postives = 126/264 (47.73%), Query Frame = 0

Query:    2 SVDGVSDDVLALIGEEGVVRQVVCGLDSCPGGPESVMVGGEATT--QPPGRMLLMRPQPQGESVRRRDRDQHQAVWHGEQLPDRAMRGGDGALLRGQDRTQQTGDEEEGVSGRM------FW---------RRHLADIEDVAFSVPSEGGTERADGEAMTDSQQAAALVNNMADPVVLAGITARLGVGIGGLDFADLTFIQGSEFPIADEFGGGSVGLG--SVPGASDPGRVG--TWIMALVLGALAVLAAASLCHRVDLNKKR 244
            S +GVSD +L  +G  GVVRQVVCGL SCP G +SV V  E T    P  RML                    AV  G Q       G    L R + R  Q    E G +         FW         RR L DI  V F +P+  GTE  DGE +T+SQ AAA +NN+ADP VL+ +   LGV +  L F++L F QG +F    EF  GS+     S PG  D   +G  TW++A+  G +++ A   +C    + ++R
Sbjct:  307 SAEGVSDTLLDSLGVAGVVRQVVCGLGSCPHGEDSVDVEAEVTAIQGPASRMLA-------------------AVGAGAQHSQSQRHGQQEILSRVRRRAPQHRQLEAGAAAASSRDPTTFWSEQRQELGRRRRLGDITGVEFKLPTGEGTEGDDGEVLTESQLAAAFINNVADPAVLSSLATDLGVDVEDLGFSNLAFYQGQKFVFDKEFDVGSLEFSGSSTPGGDDV-TLGYHTWLLAI--GLVSIPAFIVVCIHSCIERER 548

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig893.17944.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig893.17944.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G341_ECTSI	1.720e-25	36.36	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 214..235
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 236..280
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..213
None	No IPR available	TMHMM	TMhelix		coord: 214..236

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig893	contig	L-elsbetiae_contig893:21418..25209 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig893.17944.1	mRNA_L-elsbetiae_contig893.17944.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig893 21418..25209 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig893.17944.1 ID=prot_L-elsbetiae_contig893.17944.1|Name=mRNA_L-elsbetiae_contig893.17944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp
LSVDGVSDDVLALIGEEGVVRQVVCGLDSCPGGPESVMVGGEATTQPPGR
MLLMRPQPQGESVRRRDRDQHQAVWHGEQLPDRAMRGGDGALLRGQDRTQ
QTGDEEEGVSGRMFWRRHLADIEDVAFSVPSEGGTERADGEAMTDSQQAA
ALVNNMADPVVLAGITARLGVGIGGLDFADLTFIQGSEFPIADEFGGGSV
GLGSVPGASDPGRVGTWIMALVLGALAVLAAASLCHRVDLNKKRRFLARA
DETALKSSNVDSIPIAPVMMSVNKVPGRAS*