mRNA_L-elsbetiae_contig893.17944.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig893.17944.1
Unique NamemRNA_L-elsbetiae_contig893.17944.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig893.17944.1 vs. uniprot
Match: D7G341_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G341_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.720e-25
Identity = 96/264 (36.36%), Postives = 126/264 (47.73%), Query Frame = 1 
Query:    4 SVDGVSDDVLALIGEEGVVRQVVCGLDSCPGGPESVMVGGEATT--QPPGRMLLMRPQPQGESVRRRDRDQHQAVWHGEQLPDRAMRGGDGALLRGQDRTQQTGDEEEGVSGRM------FW---------RRHLADIEDVAFSVPSEGGTERADGEAMTDSQQAAALVNNMADPVVLAGITARLGVGIGGLDFADLTFIQGSEFPIADEFGGGSVGLG--SVPGASDPGRVG--TWIMALVLGALAVLAAASLCHRVDLNKKR 732
            S +GVSD +L  +G  GVVRQVVCGL SCP G +SV V  E T    P  RML                    AV  G Q       G    L R + R  Q    E G +         FW         RR L DI  V F +P+  GTE  DGE +T+SQ AAA +NN+ADP VL+ +   LGV +  L F++L F QG +F    EF  GS+     S PG  D   +G  TW++A+  G +++ A   +C    + ++R
Sbjct:  307 SAEGVSDTLLDSLGVAGVVRQVVCGLGSCPHGEDSVDVEAEVTAIQGPASRMLA-------------------AVGAGAQHSQSQRHGQQEILSRVRRRAPQHRQLEAGAAAASSRDPTTFWSEQRQELGRRRRLGDITGVEFKLPTGEGTEGDDGEVLTESQLAAAFINNVADPAVLSSLATDLGVDVEDLGFSNLAFYQGQKFVFDKEFDVGSLEFSGSSTPGGDDV-TLGYHTWLLAI--GLVSIPAFIVVCIHSCIERER 548
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig893.17944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G341_ECTSI1.720e-2536.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig893contigL-elsbetiae_contig893:21418..25209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size843
Cds size843
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig893.17944.1prot_L-elsbetiae_contig893.17944.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig893 21418..25209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816969.180421-CDS-L-elsbetiae_contig893:21417..216381622816969.180421-CDS-L-elsbetiae_contig893:21417..21638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 21418..21638 -
1691683949.6045704-CDS-L-elsbetiae_contig893:21417..216381691683949.6045704-CDS-L-elsbetiae_contig893:21417..21638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 21418..21638 -
1622816969.193081-CDS-L-elsbetiae_contig893:22508..226531622816969.193081-CDS-L-elsbetiae_contig893:22508..22653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 22509..22653 -
1691683949.616071-CDS-L-elsbetiae_contig893:22508..226531691683949.616071-CDS-L-elsbetiae_contig893:22508..22653Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 22509..22653 -
1622816969.2048252-CDS-L-elsbetiae_contig893:24182..245931622816969.2048252-CDS-L-elsbetiae_contig893:24182..24593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 24183..24593 -
1691683949.6322088-CDS-L-elsbetiae_contig893:24182..245931691683949.6322088-CDS-L-elsbetiae_contig893:24182..24593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 24183..24593 -
1622816969.2146058-CDS-L-elsbetiae_contig893:25143..252091622816969.2146058-CDS-L-elsbetiae_contig893:25143..25209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 25144..25209 -
1691683949.6468751-CDS-L-elsbetiae_contig893:25143..252091691683949.6468751-CDS-L-elsbetiae_contig893:25143..25209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig893 25144..25209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig893.17944.1

>prot_L-elsbetiae_contig893.17944.1 ID=prot_L-elsbetiae_contig893.17944.1|Name=mRNA_L-elsbetiae_contig893.17944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp
LSVDGVSDDVLALIGEEGVVRQVVCGLDSCPGGPESVMVGGEATTQPPGR
MLLMRPQPQGESVRRRDRDQHQAVWHGEQLPDRAMRGGDGALLRGQDRTQ
QTGDEEEGVSGRMFWRRHLADIEDVAFSVPSEGGTERADGEAMTDSQQAA
ALVNNMADPVVLAGITARLGVGIGGLDFADLTFIQGSEFPIADEFGGGSV
GLGSVPGASDPGRVGTWIMALVLGALAVLAAASLCHRVDLNKKRRFLARA
DETALKSSNVDSIPIAPVMMSVNKVPGRAS*
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mRNA from alignment at L-elsbetiae_contig893:21418..25209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig893.17944.1 ID=mRNA_L-elsbetiae_contig893.17944.1|Name=mRNA_L-elsbetiae_contig893.17944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3792bp|location=Sequence derived from alignment at L-elsbetiae_contig893:21418..25209- (Laminarionema elsbetiae ELsaHSoW15)
CTCTCCGTTGATGGGGTGTCGGACGACGTGTTGGCTTTGATCGGGGAAGA
GGGCGTCGTGAGGCAGGTATGTGTGTACGCGCATCGCTGGGAATATTTAT
TTTTTTGTTTTCTCAAGGCGGGGGTCGAACGTATGCAGGTGGTAAGCGCC
CGTAAGGTTCCATCGAGCAGACCCAACCTTCGGTGCTTGCGTGGGCAGCG
TACCATGTCCGCCTTGTACATCGCTTCGACTTCAAAGTTATGCCCTGCTG
TGCTCTATTGCCATGAGTGCTTTGCCTGCCCAAGGCCTTGCAGTAAGACA
CACCAGGAACAACTGCTTCAGCCCGAACGAACAGTTGAAGGCACTCCCAC
AACAGTACGGTTTGCCTGCCCAAGGCCTTGCAGTAAGACACACCAGGAAC
AACCGCTTCAGCCCGAACGAACAGTTGAAGGCACTCCCACAACAGTACGC
TCCACGCACAACCAAAGACCGGTTATTATTGGACTAGGACATCACTTCTC
CCGTGCCGACAATCCTCTTTCTCGCCTCCCCTCCGCCCCTCCCGGTCTCC
TCCAACATCGCAACCCAAACCTGGTCATTCGGCCGATCCGTCGGCGCTGG
CAACGGCGGCCGGTAGGTGGTGTGCGGGCTCGACTCGTGCCCTGGGGGGC
CCGAGTCGGTTATGGTGGGTGGTGAAGCTACGACACAGCCACCCGGCAGG
ATGTTGCTTATGAGACCGCAGCCTCAAGGCGAAAGCGTCAGACGGCGTGA
CCGGGACCAACACCAGGCGGTGTGGCACGGGGAACAACTGCCGGACCGTG
CGATGCGCGGCGGGGATGGAGCTTTGTTGCGCGGTCAGGACCGAACTCAG
CAAACGGGGGACGAGGAGGAGGGGGTTTCAGGTCGGATGTTTTGGCGGCG
GCACCTGGCGGATATCGAGGACGTTGCGTTCTCGGTGCCCTCAGAGGGGG
GCACTGAACGGGCGGACGGGGAGGCGATGACGGACTCCCAGCAGGCGGCG
GCGTTGGTGAATAACATGGCGGACCCGGTGAGCGAAGACTACCGTAGGTG
ACACAAGATACCACACCCACTGGGCAGGTTTTCAAAGCTCGGTTCCTCCC
CAGCAAGAAGAGTGCCAGTGCCGAAATGGTTGGCGTTGGAAAGATCTAGC
CCAGGGCTCTCCAAAAATGCGCCGTTTGTTTGGTGCCGACACCCTCTTCG
TTACGGAGTAATGGAGCTCTAAAAAGTCGATCAAGGGGGTGTGGTATCTT
GTGTCACCTACGGTATACTGTTGCTGCCGCCGCTGCTGCTGCTGCCGCTG
CTGCCGCTCTTCTCTTGGCAGTTGTTATTGTCTTTTGTTGTCGTTTTCGT
TGTCGGTCGTTACCGTGTATGTTATTGTGCTGCGTGGTCGATGTTCTCAC
TCCTGTCAATCGTGAGGGGATGACGATTGCTGCTGCACAGCACGCCTTCA
TTCTGCACGTTCAACTTGTTAGACCAGTTTCTGTTGGGCCAGTCTCTGCG
GCTGCCTCTGTGCTCGAGCATCGGGGGCGTCTGCCACACTTTCTCTACCG
CTGTGCGTTTGAACATCAGTCTAGCAACACCGGGGTTGGTTTCTGAAGTG
CGGCGACATCGACGTCGAAAGCACGACATGCAGAGTCATGGCTGCCTAAT
ATCGCAATCTTTGCAGGGGAGATGTTGAACTCTTCTGATATTTTAGGTTG
TTTTTCTGTTCGCTTCGCCAAATATTACGTCACTGTATGGAATACCGTTT
GAACCCCATATCGAGTCCTTGCTCTCGTGTGGGGTAGGTTCTTTCTTTGA
TTCATTGCTTATTTTTTAATATACTCCGCGTGTCATCGTGCAGACGTCTC
CACCGTTTGTCTTTTTTTTTCCTCTGCAGCCGCGTATTGTACGTATTTCT
GAATCATCTATTTGAGAGCTGGTTCTGCATACAACGTGTTGGGAAACCCG
GCGACGATAGGTGTATCTTGCAGGCGCTAAAACGGTGGTCGTTGGTTGGC
AGGACCTCATCCTCGTATCGAGTGCCATTCTTCACAAGAGCGAACGGAGC
CAACTCCAAAGAGGCTGTTGTTTTTTTCGGGAGCAAGCATCGGACGAAAC
GAGGCGTGGGGGCTTTGCAAGAAACTGCAGCTTGGCAAATAGGGGGTTTC
GGGTGTTTTGGCGCCAAGACAAGGGAGTGCTTCGGGTATTGGACAAGCAA
TTACGATGGGTACTACGCGACTGACTCTCTCATCCTCACAATATAATTTC
GATTCAATGACTTTAATTTTCGGCGGTGTCTCTTTTGATTTTCGATTCCC
TACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCCCGCGT
CGCCTCTCGCTCCCTCCTTTCTTGCCTCTCTTCCTTTTNNNNNNNNNNAT
ATTATTTTTTTTAAAATACTTTTTTTTTCGGCGGTTTTTTTTTTTTTTTT
CGTTTCCCCCCCCCCCCCCCCCCCCCCCCGCTGCTCCCCCTTCTTGTGTG
TGTGTTGGTCTATTGCTGCTTCCTATCATGCTGTCTCGTTCTTCCTTTTT
TTACAGGTCGTCCTGGCGGGGATAACGGCACGACTCGGCGTGGGCATCGG
GGGTCTCGACTTCGCAGACTTGACCTTCATCCAGGGGAGCGAGTTCCCCA
TCGCGGACGAGTTCGGCGGCGGCTCCGTGGGACTCGGCAGTGTTCCCGGT
GGTGAGTCGGCTTGCTGTTTCGACAGGGCATCCCGCTCGTCCATGTCTGT
ACCGCGCCGTGCGTGCAATCTGTTTGCTCCGTTGATGCTGTACGGGTGAG
CTGACCTGAATGGTTATATCTAGTGCTGCTTCCATCGCCCTGGCCGGACC
TCAGTATTGGGTGATATGACAGAAATGCCTGAGAGAACGTCAGCGTGTTG
CGGCATGCGCGTTTGGACGGCAGCTGCTGTATGCAGAGCGATAATTTTCC
ACGTACCAGCCGTCGCGTGTCGGTGCGTTTAAGGCTCGGACGTGTTTTGA
TAAGGCTCGAGGTAGAGATGGATTCTCTGGACCGTCGACAACCAAAAATG
TCGAGATGTGTAGCTTGGTGCTGTTGCACATGACGTTTCTATAGCCCCCC
TTTCCAAAAGCCTTTGGGGAGGGGGGGGGGGGCGTATGTACACGGCCTGC
GGACACCTCGTTCCTGGTATTTGATGAACTGGGATGCTACAAACGGGATT
TCCCGCGAGCGTGGCTGTTTTTTTTGTTTCTGACGTAACAGACAGTAGCT
GTTTCCCCCCCAACCCACACAGCAGTCCGTGGCCACAGGCAGGTAGGGCA
CCGAAACAGCCCCATTAGGAATACCTACGCCTGCACGCAAGGAAATGCGG
AGCCCCCATAGATGAAGGGTTTCTGTTATGTTCACCAAGCGCACTAAAAA
AGCAAAGCCAAACAACAGAATCTGTGTCTTGGTAAAAAGGCATGCACGCG
GTCCTTCTCACCACCCACTCCCATCGTGTTTTGGAATGTGTTCGTGCGGA
CGAAACCTCTCGTGGTAAACGTACGGATGCCAAATGTTTACTTTTTCCCG
GCCCAATCATCACCGACGAAGCAAGCGATCCCGGACGGGTCGGCACCTGG
ATCATGGCCCTAGTCCTGGGGGCCCTCGCGGTGCTAGCCGCGGCGAGCTT
GTGCCACCGCGTAGACCTGAACAAGAAGCGTCGTTTCCTCGCACGGGCGG
ACGAGACCGCCCTTAAGAGCTCCAACGTCGACAGCATTCCAATCGCGCCA
GTCATGATGAGCGTGAACAAGGTACCGGGCCGTGCTTCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig893:21418..25209-

>mRNA_L-elsbetiae_contig893.17944.1 ID=mRNA_L-elsbetiae_contig893.17944.1|Name=mRNA_L-elsbetiae_contig893.17944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1686bp|location=Sequence derived from alignment at L-elsbetiae_contig893:21418..25209- (Laminarionema elsbetiae ELsaHSoW15)
CTCTCCGTTGATGGGGTGTCGGACGACGTGTTGGCTTTGATCGGGGAAGA
GGGCGTCGTGAGGCAGCTCTCCGTTGATGGGGTGTCGGACGACGTGTTGG
CTTTGATCGGGGAAGAGGGCGTCGTGAGGCAGGTGGTGTGCGGGCTCGAC
TCGTGCCCTGGGGGGCCCGAGTCGGTTATGGTGGGTGGTGAAGCTACGAC
ACAGCCACCCGGCAGGATGTTGCTTATGAGACCGCAGCCTCAAGGCGAAA
GCGTCAGACGGCGTGACCGGGACCAACACCAGGCGGTGTGGCACGGGGAA
CAACTGCCGGACCGTGCGATGCGCGGCGGGGATGGAGCTTTGTTGCGCGG
TCAGGACCGAACTCAGCAAACGGGGGACGAGGAGGAGGGGGTTTCAGGTC
GGATGTTTTGGCGGCGGCACCTGGCGGATATCGAGGACGTTGCGTTCTCG
GTGCCCTCAGAGGGGGGCACTGAACGGGCGGACGGGGAGGCGATGACGGA
CTCCCAGCAGGCGGCGGCGTTGGTGAATAACATGGCGGACCCGGTGGTGT
GCGGGCTCGACTCGTGCCCTGGGGGGCCCGAGTCGGTTATGGTGGGTGGT
GAAGCTACGACACAGCCACCCGGCAGGATGTTGCTTATGAGACCGCAGCC
TCAAGGCGAAAGCGTCAGACGGCGTGACCGGGACCAACACCAGGCGGTGT
GGCACGGGGAACAACTGCCGGACCGTGCGATGCGCGGCGGGGATGGAGCT
TTGTTGCGCGGTCAGGACCGAACTCAGCAAACGGGGGACGAGGAGGAGGG
GGTTTCAGGTCGGATGTTTTGGCGGCGGCACCTGGCGGATATCGAGGACG
TTGCGTTCTCGGTGCCCTCAGAGGGGGGCACTGAACGGGCGGACGGGGAG
GCGATGACGGACTCCCAGCAGGCGGCGGCGTTGGTGAATAACATGGCGGA
CCCGGTCGTCCTGGCGGGGATAACGGCACGACTCGGCGTGGGCATCGGGG
GTCTCGACTTCGCAGACTTGACCTTCATCCAGGGGAGCGAGTTCCCCATC
GCGGACGAGTTCGGCGGCGGCTCCGTGGGACTCGGCAGTGTTCCCGGTGG
TCGTCCTGGCGGGGATAACGGCACGACTCGGCGTGGGCATCGGGGGTCTC
GACTTCGCAGACTTGACCTTCATCCAGGGGAGCGAGTTCCCCATCGCGGA
CGAGTTCGGCGGCGGCTCCGTGGGACTCGGCAGTGTTCCCGGTGCAAGCG
ATCCCGGACGGGTCGGCACCTGGATCATGGCCCTAGTCCTGGGGGCCCTC
GCGGTGCTAGCCGCGGCGAGCTTGTGCCACCGCGTAGACCTGAACAAGAA
GCGTCGTTTCCTCGCACGGGCGGACGAGACCGCCCTTAAGAGCTCCAACG
TCGACAGCATTCCAATCGCGCCAGTCATGATGAGCGTGAACAAGGTACCG
GGCCGTGCTTCTTGACAAGCGATCCCGGACGGGTCGGCACCTGGATCATG
GCCCTAGTCCTGGGGGCCCTCGCGGTGCTAGCCGCGGCGAGCTTGTGCCA
CCGCGTAGACCTGAACAAGAAGCGTCGTTTCCTCGCACGGGCGGACGAGA
CCGCCCTTAAGAGCTCCAACGTCGACAGCATTCCAATCGCGCCAGTCATG
ATGAGCGTGAACAAGGTACCGGGCCGTGCTTCTTGA
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