prot_L-elsbetiae_contig8544.17579.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig8544.17579.1
Unique Nameprot_L-elsbetiae_contig8544.17579.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length122
Homology
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A6P6C600_PTEVA (DNA-directed RNA polymerase n=1 Tax=Pteropus vampyrus TaxID=132908 RepID=A0A6P6C600_PTEVA)

HSP 1 Score: 70.5 bits (171), Expect = 1.970e-13
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0
Query:   44 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 84
            IVPQ DMPF   GICP++IMNPHGFPSRMTVGK +EL+AGK
Sbjct:   14 IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGK 54          
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: D7G075_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G075_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.260e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0
Query:   44 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 84
            IVPQ DMPFA  GICP+LIMNPHGFPSRMTVGK VELVAGK
Sbjct:  225 IVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGK 265          
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.420e-13
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0
Query:   44 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 84
            IVPQ DMPF+  GICP+LIMNPHGFPSRMTVGK +EL+AGK
Sbjct:  955 IVPQADMPFSEMGICPDLIMNPHGFPSRMTVGKMIELIAGK 995          
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A7S3JVT2_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVT2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.430e-13
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0
Query:   43 AIVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 84
            AIVPQ DMPF+  G+CP+LIMNPHGFPSRMTVGK +ELVAGK
Sbjct: 1023 AIVPQEDMPFSDTGVCPDLIMNPHGFPSRMTVGKIIELVAGK 1064          
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A5J4VU80_9EUKA (DNA-directed RNA polymerase subunit beta n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4VU80_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 1.280e-12
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 0
Query:   44 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK--VRYGTIVREGT 95
            IVPQ DMPF   GICP+LIMNPHG+PSRMTVGK +ELVAGK  V  GT  R+GT
Sbjct:  929 IVPQEDMPFTDQGICPDLIMNPHGYPSRMTVGKLIELVAGKAAVNEGTF-RDGT 981          
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A397SYK3_9GLOM (DNA-directed RNA polymerase subunit beta n=15 Tax=Glomeromycetes TaxID=214506 RepID=A0A397SYK3_9GLOM)

HSP 1 Score: 73.2 bits (178), Expect = 1.290e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0
Query:   44 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK-------VRYGT 89
            IVPQ DMPFA  GICP++IMNPHGFPSRMTVGK +EL+AGK       ++YGT
Sbjct:  946 IVPQEDMPFADSGICPDIIMNPHGFPSRMTVGKMIELLAGKAGVLKGELQYGT 998          
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO)

HSP 1 Score: 72.8 bits (177), Expect = 1.770e-12
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 0
Query:   44 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGKV-------RYGT 89
            IVPQ D+PF   G+CP++IMNPHGFPSRMTVGK +EL+AGK        RYGT
Sbjct: 1214 IVPQTDLPFTDEGVCPDMIMNPHGFPSRMTVGKMIELIAGKAGLQDGKRRYGT 1266          
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A8J6A225_GALPY (DNA-directed RNA polymerase n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6A225_GALPY)

HSP 1 Score: 70.5 bits (171), Expect = 2.950e-12
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0
Query:   44 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK 84
            IVPQ DMPF   GICP++IMNPHGFPSRMTVGK +EL+AGK
Sbjct:   10 IVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGK 50          
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A6A7GDK3_9CRUS (DNA-directed RNA polymerase (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GDK3_9CRUS)

HSP 1 Score: 72.0 bits (175), Expect = 2.990e-12
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 0
Query:   44 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGKV-------RYGT 89
            IVPQ DMPF+  GICP++IMNPHGFPSRMTVGK +ELVAGK        +YGT
Sbjct:  281 IVPQRDMPFSDLGICPDIIMNPHGFPSRMTVGKMIELVAGKAGVLQGKFKYGT 333          
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Match: A0A397G7W3_9GLOM (DNA-directed RNA polymerase subunit beta n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G7W3_9GLOM)

HSP 1 Score: 72.0 bits (175), Expect = 3.110e-12
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0
Query:   44 IVPQVDMPFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGK-------VRYGT 89
            IVPQ DMPF+  GICP++IMNPHGFPSRMTVGK +EL+AGK       ++YGT
Sbjct:  440 IVPQEDMPFSDAGICPDIIMNPHGFPSRMTVGKMIELLAGKAGVLKGELQYGT 492          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8544.17579.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P6C600_PTEVA1.970e-1378.05DNA-directed RNA polymerase n=1 Tax=Pteropus vampy... [more]
D7G075_ECTSI3.260e-1387.80DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
A0A835Z565_9STRA9.420e-1380.49DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S3JVT2_9STRA9.430e-1380.95DNA-directed RNA polymerase subunit beta (Fragment... [more]
A0A5J4VU80_9EUKA1.280e-1272.22DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A397SYK3_9GLOM1.290e-1267.92DNA-directed RNA polymerase subunit beta n=15 Tax=... [more]
A0A5A8CMB6_CAFRO1.770e-1264.15DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
A0A8J6A225_GALPY2.950e-1278.05DNA-directed RNA polymerase n=1 Tax=Galemys pyrena... [more]
A0A6A7GDK3_9CRUS2.990e-1267.92DNA-directed RNA polymerase (Fragment) n=2 Tax=Hir... [more]
A0A397G7W3_9GLOM3.110e-1266.04DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 44..91
e-value: 1.5E-16
score: 60.5
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 41..118
e-value: 5.6E-15
score: 57.6
NoneNo IPR availablePANTHERPTHR20856:SF24coord: 42..87
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 43..86
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 42..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8544contigL-elsbetiae_contig8544:6435..7828 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8544.17579.1mRNA_L-elsbetiae_contig8544.17579.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig8544 6435..8253 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig8544.17579.1 ID=prot_L-elsbetiae_contig8544.17579.1|Name=mRNA_L-elsbetiae_contig8544.17579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MGGPGGVYGRRERGPSTSSRYSSGRPGDQRWETQVLLATRAHAIVPQVDM
PFAAPGICPNLIMNPHGFPSRMTVGKRVELVAGKVRYGTIVREGTRDSQE
RRREEVGPQLNTPGSEKTARA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007120DNA-dir_RNAP_su2_dom
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR015712DNA-dir_RNA_pol_su2